Gene detail

Detailed information of OS493_004177-T1 in Lophelia pertusa

Genomic Location: scaffold_8:3113616...3116371
NR annotation: KAJ7387207.1, hypothetical protein OS493_004177 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6IRI9	Dimethylaniline monooxygenase [N-oxide-forming] 2 OS=Rattus norvegicus OX=10116 GN=Fmo2 PE=2 SV=3
Q8K4C0	Flavin-containing monooxygenase 5 OS=Rattus norvegicus OX=10116 GN=Fmo5 PE=1 SV=3
Q8HZ69	Dimethylaniline monooxygenase [N-oxide-forming] 2 OS=Gorilla gorilla gorilla OX=9595 GN=FMO2 PE=3 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000875 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00743 all species →	FMO-like	Flavin-binding monooxygenase-like	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000960 all species →	Family	Flavin monooxygenase FMO	Interproscan
IPR002253 all species →	Family	Flavin monooxygenase (FMO) 1	Interproscan
IPR020946 all species →	Family	Flavin monooxygenase-like	Interproscan
IPR036188 all species →	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR050346 all species →	Family	Flavin-containing Monooxygenases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23023 all species →	DIMETHYLANILINE MONOOXYGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0050661 all species →	Molecular Function	NADP binding	Interproscan
GO:0004499 all species →	Molecular Function	N,N-dimethylaniline monooxygenase activity	Interproscan
GO:0004497 all species →	Molecular Function	monooxygenase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00485	FMO; dimethylaniline monooxygenase (N-oxide forming) / hypotaurine monooxygenase	EC:1.14.13.8 EC:1.8.1.-	Drug metabolism - cytochrome P450	ko00982	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_004177-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

5.7Max TPM

1.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	1.89	2.90
polyp at pH7 6	18	17	1.97	3.41
coral polyp · control treatment	16	16	1.73	3.41
coral polyp · oil and dispersant treatment	16	15	1.03	3.29
coral polyp · oil treatment	16	16	1.40	2.53
coral polyp · dispersant treatment	16	16	2.16	5.68
Polyp	10	8	0.87	1.94

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.90
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.88
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.57
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.50
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.45
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.36
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.24
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.18
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.09
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.96
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.58
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.50
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.45
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.32
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.19
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.07
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.92
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.88
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.41
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.26
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.84
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.73
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.69
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.64
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.19
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.94
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.90
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.88
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.78
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.55
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.54
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.52
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.28
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.26
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.05
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.41
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.01
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.90
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.72
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.48
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.93
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.77
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.73
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.53
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.33
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.31
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.05
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.89
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.68
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.63
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.25
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.29
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.09
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.91
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.29
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.28
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.20
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.11
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.08
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.04
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.69
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.66
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.40
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.19
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.18
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.13
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.53
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.48
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.37
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.34
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.05
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.81
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.60
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.59
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.31
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.85
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.81
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.65
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.61
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.57
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.56
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.26
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.68
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.29
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.77
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.78
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.50
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.29
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.14
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.67
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.47
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.40
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.31
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.18
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.91
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.61
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.45
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.19
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.94
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.25
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.24
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.01
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.95
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.93
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.78
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.64
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.