Gene detail

Detailed information of OS493_004190-T1 in Lophelia pertusa

Genomic Location: scaffold_8:3328743...3331633
NR annotation: KAJ7387218.1, hypothetical protein OS493_004190 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Z0J4	Nitric oxide synthase 1 OS=Mus musculus OX=10090 GN=Nos1 PE=1 SV=1
P29476	Nitric oxide synthase 1 OS=Rattus norvegicus OX=10116 GN=Nos1 PE=1 SV=1
P29475	Nitric oxide synthase 1 OS=Homo sapiens OX=9606 GN=NOS1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001021 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00175 all species →	NAD_binding_1	Oxidoreductase NAD-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050607 all species →	Family	Nitric Oxide Synthase (NOS)	Interproscan
IPR039261 all species →	Homologous_superfamily	Ferredoxin-NADP reductase (FNR), nucleotide-binding domain	Interproscan
IPR001433 all species →	Domain	Oxidoreductase FAD/NAD(P)-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43410 all species →	NITRIC OXIDE SYNTHASE OXYGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_004190-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_004190-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

95TPM > 0

7Conditions

6.7Max TPM

1.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	1.45	3.60
polyp at pH7 6	18	15	1.26	3.50
coral polyp · control treatment	16	14	2.01	4.29
coral polyp · oil and dispersant treatment	16	14	1.56	3.98
coral polyp · oil treatment	16	15	1.54	3.75
coral polyp · dispersant treatment	16	13	1.71	4.36
Polyp	10	7	1.99	6.74

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.60
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.27
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.60
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.50
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.67
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.49
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.46
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.31
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.31
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.17
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.08
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.95
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.89
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.88
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.74
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.72
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.42
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.50
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.45
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.86
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.84
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.72
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.42
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.39
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.11
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.08
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.85
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.71
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.64
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.55
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.29
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.23
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.29
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.22
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.62
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.61
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.68
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.49
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.17
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.03
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.65
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.62
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.49
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.48
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.47
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.27
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.98
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.72
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.98
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.73
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.62
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.77
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.52
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.43
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.07
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.01
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.85
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.79
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.33
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.20
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.75
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.17
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.79
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.20
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.05
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.98
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.78
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.74
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.68
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.45
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.59
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.45
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.33
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.31
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.31
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.36
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.09
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.06
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.63
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.16
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.85
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.80
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.61
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.59
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.57
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.37
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.15
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.15
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	6.74
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.38
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.51
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.17
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.01
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.90
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.22
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.