Gene detail

Detailed information of OS493_004192-T1 in Lophelia pertusa

Genomic Location: scaffold_8:3376357...3390341
NR annotation: KAJ7387220.1, hypothetical protein OS493_004192 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Z0J4	Nitric oxide synthase 1 OS=Mus musculus OX=10090 GN=Nos1 PE=1 SV=1
P29475	Nitric oxide synthase 1 OS=Homo sapiens OX=9606 GN=NOS1 PE=1 SV=2
P29476	Nitric oxide synthase 1 OS=Rattus norvegicus OX=10116 GN=Nos1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001021 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00667 all species →	FAD_binding_1	FAD binding domain	Domain	Interproscan
PF00175 all species →	NAD_binding_1	Oxidoreductase NAD-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050607 all species →	Family	Nitric Oxide Synthase (NOS)	Interproscan
IPR017938 all species →	Homologous_superfamily	Riboflavin synthase-like beta-barrel	Interproscan
IPR039261 all species →	Homologous_superfamily	Ferredoxin-NADP reductase (FNR), nucleotide-binding domain	Interproscan
IPR017927 all species →	Domain	FAD-binding domain, ferredoxin reductase-type	Interproscan
IPR003097 all species →	Domain	Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding	Interproscan
IPR001433 all species →	Domain	Oxidoreductase FAD/NAD(P)-binding	Interproscan
IPR023173 all species →	Homologous_superfamily	NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily	Interproscan
IPR001709 all species →	Domain	Flavoprotein pyridine nucleotide cytochrome reductase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43410 all species →	NITRIC OXIDE SYNTHASE OXYGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_004192-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_004192-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

103TPM > 0

7Conditions

5.7Max TPM

2.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	1.78	3.72
polyp at pH7 6	18	17	1.81	3.95
coral polyp · control treatment	16	16	2.92	5.71
coral polyp · oil and dispersant treatment	16	15	1.92	3.54
coral polyp · oil treatment	16	15	2.05	3.98
coral polyp · dispersant treatment	16	15	2.43	5.23
Polyp	10	7	1.73	5.19

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.72
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.83
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.79
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.53
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.09
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.01
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.99
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.92
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.91
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.62
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.60
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.40
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.37
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.31
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.23
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.80
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.55
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.43
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.95
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.56
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.52
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.34
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.19
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.17
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.13
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.90
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.85
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.84
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.72
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.69
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.66
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.65
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.98
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.77
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.63
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.71
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.84
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.58
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.34
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.06
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.39
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.37
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.75
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.42
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.29
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.06
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.88
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.82
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.47
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.24
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.52
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.54
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.43
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.38
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.09
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.93
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.53
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.49
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.28
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.57
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.20
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.19
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.12
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.92
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.80
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.26
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.98
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.92
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.27
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.93
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.90
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.57
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.41
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.27
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.97
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.80
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.35
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.16
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.79
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.78
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.67
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.23
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.91
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.73
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.66
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.02
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.63
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.42
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.36
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.15
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.14
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.10
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.99
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.95
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.35
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.23
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	5.19
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.66
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.45
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.76
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.53
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.03
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.66
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.