Gene detail

Detailed information of OS493_004193-T1 in Lophelia pertusa

Genomic Location: scaffold_8:3406799...3414056
NR annotation: KAJ7387221.1, hypothetical protein OS493_004193 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q29498	Nitric oxide synthase 1 OS=Ovis aries OX=9940 GN=NOS1 PE=2 SV=3
P29476	Nitric oxide synthase 1 OS=Rattus norvegicus OX=10116 GN=Nos1 PE=1 SV=1
O19132	Nitric oxide synthase 1 OS=Oryctolagus cuniculus OX=9986 GN=NOS1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001021 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan
PF02898 all species →	NO_synthase	Nitric oxide synthase, oxygenase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR036119 all species →	Homologous_superfamily	Nitric oxide synthase, N-terminal domain superfamily	Interproscan
IPR004030 all species →	Domain	Nitric oxide synthase, N-terminal	Interproscan
IPR044943 all species →	Homologous_superfamily	Nitric oxide synthase, domain 1 superfamily	Interproscan
IPR050607 all species →	Family	Nitric Oxide Synthase (NOS)	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43410 all species →	NITRIC OXIDE SYNTHASE OXYGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004517 all species →	Molecular Function	nitric-oxide synthase activity	Interproscan
GO:0006809 all species →	Biological Process	nitric oxide biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_004193-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_004193-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

94TPM > 0

7Conditions

7.7Max TPM

2.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	1.76	4.94
polyp at pH7 6	18	10	1.13	4.19
coral polyp · control treatment	16	16	3.82	7.74
coral polyp · oil and dispersant treatment	16	16	3.18	5.30
coral polyp · oil treatment	16	16	2.88	6.48
coral polyp · dispersant treatment	16	14	3.54	7.36
Polyp	10	6	0.99	3.04

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.94
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.82
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.47
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.34
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.21
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.92
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.81
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.65
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.57
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.53
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.49
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.40
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.38
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.34
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.20
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.65
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.19
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.84
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.82
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.28
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.98
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.62
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.36
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.34
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.23
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.72
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.74
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.33
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.94
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.90
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.13
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.74
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.70
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.59
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.49
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.95
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.72
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.62
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.16
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.41
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.88
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.87
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.30
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.16
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.09
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.63
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.18
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.86
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.84
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.47
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.53
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.52
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.49
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.36
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.99
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.50
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.21
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.68
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.48
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.69
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.05
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.88
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.70
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.61
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.54
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.20
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.64
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.51
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.15
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.93
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.79
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.03
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.83
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.08
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.36
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.45
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.44
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.28
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.81
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.19
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.12
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.82
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.47
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.26
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.18
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.46
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.44
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.38
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.04
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.89
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.52
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.08
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.76
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.58
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.