Gene detail

Detailed information of OS493_004218-T1 in Lophelia pertusa

Genomic Location: scaffold_8:3865329...3872878
NR annotation: KAJ7387244.1, Membrane-associated phosphatidylinositol transfer protein 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BZ71	Membrane-associated phosphatidylinositol transfer protein 3 OS=Homo sapiens OX=9606 GN=PITPNM3 PE=1 SV=2
P43125	Protein retinal degeneration B OS=Drosophila melanogaster OX=7227 GN=rdgB PE=1 SV=2
Q3UHE1	Membrane-associated phosphatidylinositol transfer protein 3 OS=Mus musculus OX=10090 GN=Pitpnm3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004721 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02862 all species →	DDHD	DDHD domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004177 all species →	Domain	DDHD domain	Interproscan
IPR036412 all species →	Homologous_superfamily	HAD-like superfamily	Interproscan
IPR023214 all species →	Homologous_superfamily	HAD superfamily	Interproscan
IPR031315 all species →	Domain	LNS2/PITP	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23509 all species →	PA-PL1 PHOSPHOLIPASE FAMILY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0004620 all species →	Molecular Function	phospholipase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0030134 all species →	Cellular Component	COPII-coated ER to Golgi transport vesicle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_004218-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_004218-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

99.6Max TPM

18.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	11.18	16.66
polyp at pH7 6	18	18	11.07	15.14
coral polyp · control treatment	16	16	19.13	40.27
coral polyp · oil and dispersant treatment	16	16	31.84	55.28
coral polyp · oil treatment	16	16	15.43	28.94
coral polyp · dispersant treatment	16	16	31.97	99.58
Polyp	10	10	6.97	12.42

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.66
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.40
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.89
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.68
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.40
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.87
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.40
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.21
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.09
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.68
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.90
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.86
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.59
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.55
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.08
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.98
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.55
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.41
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.14
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.09
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.48
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.45
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.43
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.34
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.53
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.24
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.32
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.16
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.11
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.81
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.34
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.04
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.62
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.57
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.53
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.02
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.27
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.21
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.63
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.59
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.78
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.58
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.74
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.32
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.33
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.23
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.23
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.07
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.37
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.27
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.85
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.61
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.28
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.29
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.79
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.32
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.76
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.89
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.89
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.68
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.50
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.56
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.36
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.64
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.42
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.50
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.05
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.50
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.94
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.28
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.17
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.75
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.73
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.63
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.12
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.75
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.44
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.33
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.54
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.90
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.92
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.97
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.97
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.44
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	99.58
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	82.80
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	51.27
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.86
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.59
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.58
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.03
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.50
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.93
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.55
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.50
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.71
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.49
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.89
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.93
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.27
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	12.42
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	9.48
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	8.59
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	7.27
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	6.69
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.02
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.81
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.21
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.69
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.54

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.