Gene detail

Detailed information of OS493_004241-T1 in Lophelia pertusa

Genomic Location: scaffold_8:4113890...4115433
NR annotation: KAJ7387265.1, hypothetical protein OS493_004241 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P97852	Peroxisomal multifunctional enzyme type 2 OS=Rattus norvegicus OX=10116 GN=Hsd17b4 PE=1 SV=3
P51660	Peroxisomal multifunctional enzyme type 2 OS=Mus musculus OX=10090 GN=Hsd17b4 PE=1 SV=3
P51659	Peroxisomal multifunctional enzyme type 2 OS=Homo sapiens OX=9606 GN=HSD17B4 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005056 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02036 all species →	SCP2	SCP-2 sterol transfer family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039543 all species →	Family	Lipid-binding protein POX18/NSL-TP1	Interproscan
IPR036527 all species →	Homologous_superfamily	SCP2 sterol-binding domain superfamily	Interproscan
IPR003033 all species →	Domain	SCP2 sterol-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10094 all species →	STEROL CARRIER PROTEIN 2 SCP-2 FAMILY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005829 all species →	Cellular Component	cytosol	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_004241-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_004241-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

49.7Max TPM

20.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	28.45	49.70
polyp at pH7 6	18	18	28.96	43.35
coral polyp · control treatment	16	16	21.91	36.23
coral polyp · oil and dispersant treatment	16	16	12.24	24.59
coral polyp · oil treatment	16	16	18.25	29.75
coral polyp · dispersant treatment	16	16	15.45	31.76
Polyp	10	9	16.03	32.45

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.70
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.22
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.67
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.52
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.15
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.09
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.67
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.37
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.80
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.33
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.39
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.34
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.62
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.98
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.09
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.96
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.20
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.04
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.35
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.05
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.57
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.18
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.99
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.51
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.85
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.67
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.20
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.44
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.72
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.33
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.71
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.30
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.42
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.45
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.96
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.64
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.23
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.76
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.70
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.37
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.05
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.93
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.65
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.23
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.23
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.82
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.00
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.97
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.76
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.58
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.21
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.05
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.59
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.61
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.02
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.29
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.97
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.23
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.78
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.21
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.11
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.01
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.45
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.54
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.90
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.97
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.28
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.95
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.75
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.75
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.26
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.24
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.62
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.65
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.33
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.65
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.92
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.31
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.48
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.43
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.80
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.26
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.58
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.97
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.76
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.83
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.62
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.45
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.64
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.75
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.55
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.91
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.53
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.58
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.45
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.55
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.30
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.67
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.53
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.12
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	32.45
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	25.31
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	21.74
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	19.31
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	16.68
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	14.24
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	11.33
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	10.60
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	8.63
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.