Gene detail

Detailed information of OS493_004250-T1 in Lophelia pertusa

Genomic Location: scaffold_8:4234300...4239729
NR annotation: KAJ7387273.1, BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 3 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9H3F6	BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 3 OS=Homo sapiens OX=9606 GN=KCTD10 PE=1 SV=1
Q5RBH4	BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 2 OS=Pongo abelii OX=9601 GN=TNFAIP1 PE=2 SV=1
Q7TPL3	BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 3 OS=Rattus norvegicus OX=10116 GN=Kctd10 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008836 (this species only)
Ubiquitin family	E3\|E3 adaptor Cullin RING\|BTB · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02214 all species →	BTB_2	BTB/POZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011333 all species →	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan
IPR000210 all species →	Domain	BTB/POZ domain	Interproscan
IPR045068 all species →	Family	BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 1/2/3	Interproscan
IPR003131 all species →	Domain	Potassium channel tetramerisation-type BTB domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11145 all species →	BTB/POZ DOMAIN-CONTAINING ADAPTER FOR CUL3-MEDIATED RHOA DEGRADATION PROTEIN FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0051260 all species →	Biological Process	protein homooligomerization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15074	BACURD; BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_004250-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

179.9Max TPM

35.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	23.38	37.41
polyp at pH7 6	18	18	28.04	38.50
coral polyp · control treatment	16	16	32.16	44.62
coral polyp · oil and dispersant treatment	16	16	56.39	103.34
coral polyp · oil treatment	16	16	28.09	44.21
coral polyp · dispersant treatment	16	16	54.12	179.94
Polyp	10	10	19.53	38.01

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.41
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.98
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.39
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.39
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.38
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.73
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.72
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.41
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.11
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.43
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.34
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.05
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.05
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.80
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.80
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.59
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.46
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.77
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.50
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.17
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.20
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.94
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.83
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.54
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.46
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.42
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.09
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.95
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.31
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.21
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.39
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.36
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.58
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.52
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.11
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.22
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.62
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.80
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.97
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.65
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.78
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.33
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.79
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.28
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.92
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.76
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.15
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.09
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.09
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.58
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.74
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.95
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	103.34
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	101.98
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	84.28
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	71.73
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.12
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	59.95
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	58.61
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	54.50
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.09
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.18
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.85
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.39
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.16
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.51
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.99
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.55
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.21
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.72
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.34
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.84
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.61
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.39
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.13
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.80
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.93
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.47
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.56
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.31
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.94
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.02
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.97
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.19
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	179.94
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	118.42
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	67.83
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	59.69
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.43
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	49.77
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.82
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.36
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.60
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.03
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.97
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.95
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.09
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.43
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.91
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.74
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	38.01
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	28.57
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	25.99
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	21.97
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	18.05
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	17.11
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	15.49
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	14.10
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	10.74
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	5.25

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.