Gene detail

Detailed information of OS493_004314-T1 in Lophelia pertusa

Genomic Location: scaffold_8:4956594...4975222
NR annotation: KAJ7387327.1, fucose metabolic process [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BHT6	Beta-1,3-glucosyltransferase OS=Mus musculus OX=10090 GN=B3glct PE=1 SV=3
Q6Y288	Beta-1,3-glucosyltransferase OS=Homo sapiens OX=9606 GN=B3GLCT PE=1 SV=2
P79948	Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe OS=Xenopus laevis OX=8355 GN=lfng PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003158 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02434 all species →	Fringe	Fringe-like	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003378 all species →	Domain	Fringe-like, glycosyltransferase domain	Interproscan
IPR029044 all species →	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10811 all species →	FRINGE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016757 all species →	Molecular Function	glycosyltransferase activity	Interproscan
GO:0008375 all species →	Molecular Function	acetylglucosaminyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13675	B3GALTL; UDP-glucose:O-linked fucose beta-1,3-glucosyltransferase	EC:2.4.1.-	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_004314-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

11.7Max TPM

5.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	7.37	11.67
polyp at pH7 6	18	17	6.42	10.29
coral polyp · control treatment	16	16	5.60	11.32
coral polyp · oil and dispersant treatment	16	16	3.92	10.41
coral polyp · oil treatment	16	16	5.12	9.21
coral polyp · dispersant treatment	16	16	5.39	11.28
Polyp	10	9	3.12	6.51

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.67
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.41
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.45
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.04
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.53
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.38
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.99
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.75
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.54
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.10
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.91
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.07
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.92
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.77
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.60
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.46
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.16
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.87
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.29
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.99
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.32
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.25
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.22
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.86
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.80
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.73
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.42
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.31
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.94
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.71
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.32
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.73
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.23
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.92
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.57
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.32
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.46
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.04
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.44
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.25
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.87
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.71
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.25
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.98
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.87
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.60
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.31
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.76
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.36
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.75
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.60
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.41
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.55
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.52
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.44
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.94
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.05
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.64
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.05
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.98
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.79
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.31
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.30
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.25
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.23
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.66
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.63
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.21
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.88
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.72
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.59
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.42
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.93
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.87
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.78
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.48
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.97
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.35
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.28
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.19
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.60
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.88
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.79
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.28
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.36
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.01
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.00
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.00
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.95
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.40
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.04
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.68
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.51
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.35
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.29
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.26
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.11
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.21
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.74
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.51
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.40
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.94
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.31
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.88
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.17
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.37
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.05
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.55
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.