Detailed information of OS493_004329-T1 in Lophelia pertusa

Genomic Location: scaffold_8:5142802...5146931
NR annotation: KAJ7387340.1, Protein hgh1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6DGR4Protein HGH1 homolog OS=Danio rerio OX=7955 GN=hgh1 PE=2 SV=1
Q3KQ45Protein HGH1 homolog OS=Xenopus laevis OX=8355 GN=hgh1 PE=2 SV=1
Q66KK3Protein HGH1 homolog OS=Xenopus tropicalis OX=8364 GN=hgh1 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007478 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04063
all species →		DUF383Domain of unknown function (DUF383)FamilyInterproscan
PF04064
all species →		DUF384Domain of unknown function (DUF384)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007205
all species →		DomainProtein HGH1 N-terminalInterproscan
IPR016024
all species →		Homologous_superfamilyArmadillo-type foldInterproscan
IPR011989
all species →		Homologous_superfamilyArmadillo-like helicalInterproscan
IPR039717
all species →		FamilyProtein Hgh1Interproscan
IPR007206
all species →		DomainProtein HGH1 C-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13387
all species →		PROTEIN HGH1 HOMOLOGInterproscan

 Gene Ontology
No Gene Ontology signature was detected for OS493_004329-T1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_004329-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_004329-T1 global co-expression network
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