Gene detail

Detailed information of OS493_004349-T1 in Lophelia pertusa

Genomic Location: scaffold_8:5436951...5437286
NR annotation: KAJ7387358.1, hypothetical protein OS493_004349 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009730 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_004349-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

No InterPro signature was detected for OS493_004349-T1. This gene does have a gene model — the search simply returned no hit.

PANTHER

PANTHER term	Description	Source
PTHR37475 all species →	ZYGOTE-SPECIFIC CLASS V COPY B GENE PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_004349-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_004349-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_004349-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

445.5Max TPM

153.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	116.86	236.66
polyp at pH7 6	18	18	76.64	228.22
coral polyp · control treatment	16	16	181.59	430.65
coral polyp · oil and dispersant treatment	16	16	154.97	436.64
coral polyp · oil treatment	16	16	211.22	445.48
coral polyp · dispersant treatment	16	16	141.91	357.04
Polyp	10	10	235.73	417.28

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	236.66
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	232.78
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	230.98
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	228.24
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	228.21
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	216.30
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	125.43
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	123.99
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	123.92
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	123.82
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	86.93
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	80.38
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.54
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.25
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.59
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.77
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.16
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.46
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	228.22
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	222.62
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	156.40
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	150.48
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	104.35
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	100.69
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	83.97
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	83.42
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	65.92
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	61.10
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.51
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.86
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.22
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.40
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.71
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.49
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.40
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.86
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	430.65
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	353.61
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	302.22
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	252.86
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	241.05
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	228.02
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	227.91
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	175.16
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	161.84
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	137.05
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	128.88
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	72.50
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.31
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.18
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.95
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.30
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	436.64
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	345.41
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	297.06
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	217.71
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	210.91
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	198.69
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	163.40
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	128.85
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	114.53
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	106.50
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.61
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	60.31
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.15
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.88
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.09
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.75
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	445.48
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	422.58
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	419.83
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	349.67
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	349.19
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	343.75
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	310.14
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	164.30
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	151.14
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	104.31
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	98.03
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	91.96
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.97
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.40
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.38
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.33
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	357.04
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	337.97
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	285.33
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	227.89
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	182.95
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	137.77
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	127.28
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	114.40
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	95.76
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	95.19
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	85.02
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	78.15
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	54.77
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.33
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.38
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.34
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	417.28
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	380.03
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	326.68
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	309.31
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	277.83
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	260.99
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	159.93
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	139.55
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	45.86
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	39.81

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.