Gene detail

Detailed information of OS493_004350-T1 in Lophelia pertusa

Genomic Location: scaffold_8:5446453...5458445
NR annotation: KAJ7387359.1, positive regulation of renal water transport [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q15735	Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A OS=Homo sapiens OX=9606 GN=INPP5J PE=1 SV=3
Q8C5L6	Inositol polyphosphate 5-phosphatase K OS=Mus musculus OX=10090 GN=Inpp5k PE=1 SV=2
P59644	Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A OS=Mus musculus OX=10090 GN=Inpp5j PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005058 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17751 all species →	SKICH	SKICH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR000300 all species →	Domain	Inositol polyphosphate-related phosphatase	Interproscan
IPR046985 all species →	Family	Inositol 5-phosphatase	Interproscan
IPR041611 all species →	Domain	SKICH domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11200 all species →	INOSITOL 5-PHOSPHATASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016791 all species →	Molecular Function	phosphatase activity	Interproscan
GO:0046856 all species →	Biological Process	phosphatidylinositol dephosphorylation	Interproscan
GO:0004439 all species →	Molecular Function	phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24222	INPP5J_K; inositol polyphosphate 5-phosphatase INPP5J/K	EC:3.1.3.56	Inositol phosphate metabolism	ko00562	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_004350-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

28.9Max TPM

13.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	16.10	26.23
polyp at pH7 6	18	18	15.35	21.79
coral polyp · control treatment	16	16	15.11	28.89
coral polyp · oil and dispersant treatment	16	16	10.56	18.75
coral polyp · oil treatment	16	16	14.55	24.58
coral polyp · dispersant treatment	16	16	12.02	25.08
Polyp	10	10	10.24	17.76

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.23
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.23
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.45
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.53
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.91
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.71
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.62
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.60
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.59
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.64
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.39
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.36
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.27
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.09
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.95
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.65
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.44
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.19
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.79
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.42
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.73
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.30
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.23
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.76
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.74
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.26
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.26
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.86
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.72
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.66
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.93
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.19
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.95
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.73
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.54
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.31
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.89
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.03
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.54
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.70
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.69
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.29
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.58
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.24
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.73
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.59
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.28
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.03
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.82
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.12
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.22
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.93
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.75
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.82
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.73
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.44
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.14
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.59
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.39
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.88
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.58
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.55
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.98
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.39
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.39
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.21
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.87
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.21
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.58
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.43
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.15
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.56
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.00
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.97
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.56
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.98
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.81
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.42
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.52
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.12
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.41
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.68
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.32
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.23
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.08
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.24
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.23
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.44
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.11
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.78
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.39
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.35
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.23
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.49
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.69
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.40
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.18
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.12
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.10
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.43
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	17.76
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	16.58
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	16.42
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	12.90
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	12.42
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	7.34
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.87
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	5.46
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.10
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.53

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.