Gene detail

Detailed information of OS493_004364-T1 in Lophelia pertusa

Genomic Location: scaffold_8:5644686...5646364
NR annotation: KAJ7387370.1, hypothetical protein OS493_004364 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8WV93	AFG1-like ATPase OS=Homo sapiens OX=9606 GN=AFG1L PE=1 SV=2
O42895	Uncharacterized protein C115.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC115.02c PE=3 SV=1
Q32PX9	AFG1-like ATPase OS=Rattus norvegicus OX=10116 GN=Afg1l PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001828 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03969 all species →	AFG1_ATPase	AFG1-like ATPase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005654 all species →	Family	ATPase, AFG1-like	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12169 all species →	ATPASE N2B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_004364-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_004364-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

20.9Max TPM

2.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	2.58	4.08
polyp at pH7 6	18	16	2.07	3.59
coral polyp · control treatment	16	16	4.39	20.93
coral polyp · oil and dispersant treatment	16	16	3.31	15.63
coral polyp · oil treatment	16	16	3.37	6.01
coral polyp · dispersant treatment	16	15	2.23	6.83
Polyp	10	9	1.74	3.10

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.08
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.66
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.64
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.06
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.95
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.76
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.62
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.61
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.58
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.56
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.44
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.18
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.13
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.11
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.06
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.75
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.70
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.57
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.59
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.51
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.85
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.69
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.67
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.65
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.55
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.28
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.22
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.21
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.08
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.92
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.88
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.69
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.29
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.15
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.93
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.95
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.90
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.96
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.81
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.57
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.34
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.27
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.25
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.24
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.13
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.81
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.71
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.51
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.06
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.72
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.63
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.05
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.67
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.49
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.05
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.82
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.64
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.56
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.45
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.13
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.10
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.94
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.81
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.46
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.23
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.89
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.01
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.29
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.26
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.19
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.18
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.11
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.70
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.50
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.16
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.98
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.90
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.87
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.23
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.17
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.97
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.36
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.83
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.85
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.08
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.65
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.34
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.29
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.20
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.01
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.89
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.82
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.79
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.70
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.55
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.19
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.48
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.10
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.29
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.28
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.07
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.05
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.56
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.47
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.30
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.28
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.