Detailed information of OS493_004591-T1 in Lophelia pertusa

Genomic Location: scaffold_9:2250372...2252709
NR annotation: KAJ7380997.1, PHD finger protein 13 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8K2W6PHD finger protein 13 OS=Mus musculus OX=10090 GN=Phf13 PE=2 SV=2
Q86YI8PHD finger protein 13 OS=Homo sapiens OX=9606 GN=PHF13 PE=1 SV=2
Q5U5E5PHD finger protein 23A OS=Xenopus tropicalis OX=8364 GN=phf23 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0008068 (this species only)
Ubiquitin familyE3|E3 activity RING|PHD · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF20826
all species →		PHD_5PhD finger domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR001965
all species →		DomainZinc finger, PHD-typeInterproscan
IPR011011
all species →		Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14571
all species →		UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005634
all species →		Cellular ComponentnucleusInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K27476PHF23; PHD finger protein 23-Membrane traffickingko04131deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_004591-T1 global co-expression network
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