Gene detail

Detailed information of OS493_004599-T1 in Lophelia pertusa

Genomic Location: scaffold_9:2381950...2391109
NR annotation: KAJ7381005.1, hypothetical protein OS493_004599 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O86938	Phosphonopyruvate decarboxylase OS=Streptomyces viridochromogenes (strain DSM 40736 / JCM 4977 / BCRC 1201 / Tue 494) OX=591159 GN=ppd PE=1 SV=1
Q54271	Phosphonopyruvate decarboxylase OS=Streptomyces hygroscopicus OX=1912 GN=bcpC PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005532 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02776 all species →	TPP_enzyme_N	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain	Domain	Interproscan
PF02775 all species →	TPP_enzyme_C	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012001 all species →	Domain	Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain	Interproscan
IPR029061 all species →	Homologous_superfamily	Thiamin diphosphate-binding fold	Interproscan
IPR000399 all species →	Conserved_site	TPP-binding enzyme, conserved site	Interproscan
IPR051818 all species →	Family	Thiamine pyrophosphate-dependent decarboxylase	Interproscan
IPR011766 all species →	Domain	Thiamine pyrophosphate enzyme, TPP-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42818 all species →	SULFOPYRUVATE DECARBOXYLASE SUBUNIT ALPHA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030976 all species →	Molecular Function	thiamine pyrophosphate binding	Interproscan
GO:0000287 all species →	Molecular Function	magnesium ion binding	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09459	E4.1.1.82; phosphonopyruvate decarboxylase	EC:4.1.1.82	Biosynthesis of various antibiotics	ko00998	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_004599-T1 global co-expression network