Gene detail

Detailed information of OS493_004760-T1 in Lophelia pertusa

Genomic Location: scaffold_9:4401439...4405553
NR annotation: KAJ7381161.1, hypothetical protein OS493_004760 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000436 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21116 all species →	EF-hand_Zip	Zip protein EF-hand	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050799 all species →	Family	Zinc Iron Protein (ZIP) Transporter	Interproscan
IPR049406 all species →	Domain	Zinc transporter ZIP4/12, EF-hand	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12191 all species →	SOLUTE CARRIER FAMILY 39	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005385 all species →	Molecular Function	zinc ion transmembrane transporter activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006875 all species →	Biological Process	obsolete intracellular metal ion homeostasis	Interproscan
GO:0071578 all species →	Biological Process	zinc ion import across plasma membrane	Interproscan
GO:0140410 all species →	Molecular Function	monoatomic cation:bicarbonate symporter activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_004760-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_004760-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

99TPM > 0

7Conditions

15.3Max TPM

4.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	2.85	5.00
polyp at pH7 6	18	13	3.11	6.93
coral polyp · control treatment	16	16	5.44	11.14
coral polyp · oil and dispersant treatment	16	15	5.20	14.55
coral polyp · oil treatment	16	15	3.99	9.01
coral polyp · dispersant treatment	16	16	8.09	15.34
Polyp	10	8	1.80	4.46

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.00
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.95
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.46
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.29
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.08
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.39
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.26
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.23
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.17
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.06
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.05
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.56
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.27
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.87
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.59
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.13
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.93
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.21
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.80
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.64
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.09
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.51
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.92
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.86
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.04
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.91
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.86
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.69
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.54
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.14
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.36
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.08
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.80
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.80
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.62
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.98
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.28
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.80
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.11
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.76
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.67
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.72
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.65
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.29
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.00
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.55
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.78
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.56
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.22
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.16
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.11
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.84
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.34
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.26
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.61
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.72
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.47
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.73
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.67
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.24
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.01
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.82
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.97
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.71
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.60
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.48
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.26
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.56
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.52
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.30
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.04
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.95
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.63
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.61
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.36
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.34
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.24
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.57
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.85
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.03
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.25
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.92
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.54
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.50
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.35
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.67
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.44
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.96
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.93
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.73
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.12
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.46
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.85
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.68
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.63
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.85
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.49
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.38
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.61
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.