Gene detail

Detailed information of OS493_004793-T1 in Lophelia pertusa

Genomic Location: scaffold_9:4879836...4886652
NR annotation: KAJ7381192.1, PIN2/TERF1-interacting telomerase inhibitor 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96BK5	PIN2/TERF1-interacting telomerase inhibitor 1 OS=Homo sapiens OX=9606 GN=PINX1 PE=1 SV=2
Q9CZX5	PIN2/TERF1-interacting telomerase inhibitor 1 OS=Mus musculus OX=10090 GN=Pinx1 PE=1 SV=2
A4L691	PIN2/TERF1-interacting telomerase inhibitor 1 OS=Rattus norvegicus OX=10116 GN=Pinx1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006823 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01585 all species →	G-patch	G-patch domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050656 all species →	Family	PIN2/TERF1-interacting telomerase inhibitor	Interproscan
IPR000467 all species →	Domain	G-patch domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23149 all species →	G PATCH DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0010521 all species →	Molecular Function	telomerase inhibitor activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11135	PINX1; Pin2-interacting protein X1	-	DNA replication proteins	ko03032	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_004793-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

43.4Max TPM

11.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	9.98	19.57
polyp at pH7 6	18	18	13.59	43.40
coral polyp · control treatment	16	16	11.39	18.90
coral polyp · oil and dispersant treatment	16	16	11.57	19.10
coral polyp · oil treatment	16	16	11.77	18.52
coral polyp · dispersant treatment	16	16	6.21	14.27
Polyp	10	10	14.53	26.83

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.57
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.30
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.24
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.92
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.82
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.69
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.89
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.27
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.81
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.31
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.89
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.05
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.63
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.57
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.94
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.91
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.82
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.05
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.40
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.14
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.25
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.95
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.38
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.30
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.62
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.61
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.73
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.59
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.17
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.50
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.29
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.79
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.76
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.93
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.34
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.82
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.90
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.85
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.83
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.22
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.30
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.92
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.28
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.21
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.85
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.45
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.22
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.45
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.16
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.00
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.71
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.80
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.10
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.22
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.08
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.85
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.30
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.95
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.91
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.98
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.65
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.48
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.40
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.45
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.55
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.52
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.99
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.73
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.52
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.81
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.26
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.90
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.43
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.31
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.61
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.93
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.21
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.54
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.36
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.92
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.89
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.42
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.97
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.22
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.27
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.40
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.35
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.86
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.70
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.52
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.31
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.57
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.73
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.53
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.49
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.40
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.92
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.33
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.11
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.95
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	26.83
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	26.04
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	16.64
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	14.66
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	14.29
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	13.61
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	12.20
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	9.78
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	7.14
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.11

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.