Gene detail

Detailed information of OS493_004829-T1 in Lophelia pertusa

Genomic Location: scaffold_10:77683...82082
NR annotation: KAJ7374492.1, hypothetical protein OS493_004829 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O00142	Thymidine kinase 2, mitochondrial OS=Homo sapiens OX=9606 GN=TK2 PE=1 SV=4
Q9N0C5	Thymidine kinase 2, mitochondrial OS=Macaca fascicularis OX=9541 GN=TK2 PE=2 SV=1
Q9R088	Thymidine kinase 2, mitochondrial OS=Mus musculus OX=10090 GN=Tk2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002169 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01712 all species →	dNK	Deoxynucleoside kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031314 all species →	Domain	Deoxynucleoside kinase domain	Interproscan
IPR050566 all species →	Family	Deoxyribonucleoside Kinase	Interproscan
IPR002624 all species →	Family	Deoxynucleoside kinase	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10513 all species →	DEOXYNUCLEOSIDE KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0019136 all species →	Molecular Function	deoxynucleoside kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006139 all species →	Biological Process	nucleobase-containing compound metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_004829-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_004829-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

98TPM > 0

7Conditions

21.1Max TPM

2.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	3.65	7.75
polyp at pH7 6	18	14	2.57	5.70
coral polyp · control treatment	16	15	3.00	17.14
coral polyp · oil and dispersant treatment	16	14	2.67	21.07
coral polyp · oil treatment	16	16	2.65	5.99
coral polyp · dispersant treatment	16	15	2.34	6.63
Polyp	10	7	1.88	6.17

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.75
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.74
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.68
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.73
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.70
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.12
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.01
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.00
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.20
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.84
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.47
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.26
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.16
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.02
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.85
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.77
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.35
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.70
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.48
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.46
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.39
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.77
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.38
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.18
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.79
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.65
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.46
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.43
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.35
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.18
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.99
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.14
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.24
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.89
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.49
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.48
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.21
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.18
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.17
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.13
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.02
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.95
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.72
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.70
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.30
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.33
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.07
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.06
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.23
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.27
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.99
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.71
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.68
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.14
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.85
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.81
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.65
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.44
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.40
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.37
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.99
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.10
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.70
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.08
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.89
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.69
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.29
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.72
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.41
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.68
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.58
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.04
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.00
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.57
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.48
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.26
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.63
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.44
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.86
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.63
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.60
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.98
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.69
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.14
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.76
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.50
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.32
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.87
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.82
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.76
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.46
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	6.17
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.15
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.58
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.21
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.01
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.37
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.29
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.