Gene detail

Detailed information of OS493_004830-T1 in Lophelia pertusa

Genomic Location: scaffold_10:86786...91205
NR annotation: KAJ7374493.1, hypothetical protein OS493_004830 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9R088	Thymidine kinase 2, mitochondrial OS=Mus musculus OX=10090 GN=Tk2 PE=1 SV=2
O00142	Thymidine kinase 2, mitochondrial OS=Homo sapiens OX=9606 GN=TK2 PE=1 SV=4
Q9XZT6	Deoxynucleoside kinase OS=Drosophila melanogaster OX=7227 GN=dnk PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002169 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01712 all species →	dNK	Deoxynucleoside kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050566 all species →	Family	Deoxyribonucleoside Kinase	Interproscan
IPR031314 all species →	Domain	Deoxynucleoside kinase domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10513 all species →	DEOXYNUCLEOSIDE KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0019136 all species →	Molecular Function	deoxynucleoside kinase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_004830-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_004830-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

99TPM > 0

7Conditions

27.8Max TPM

4.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	4.20	8.66
polyp at pH7 6	18	12	3.33	11.21
coral polyp · control treatment	16	16	5.46	27.76
coral polyp · oil and dispersant treatment	16	16	3.42	19.34
coral polyp · oil treatment	16	15	4.03	9.85
coral polyp · dispersant treatment	16	15	3.21	6.24
Polyp	10	8	4.14	11.32

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.66
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.91
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.86
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.83
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.62
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.40
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.27
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.04
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.39
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.26
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.12
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.37
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.34
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.31
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.78
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.66
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.86
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.21
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.99
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.63
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.34
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.81
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.83
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.40
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.88
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.85
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.69
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.21
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.76
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.14
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.86
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.95
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.89
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.32
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.24
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.17
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.57
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.53
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.37
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.69
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.55
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.50
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.70
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.13
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.34
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.49
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.37
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.30
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.18
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.90
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.74
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.61
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.45
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.40
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.27
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.99
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.31
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.05
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.04
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.36
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.85
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.76
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.94
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.80
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.92
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.32
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.32
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.86
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.83
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.59
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.19
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.10
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.44
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.61
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.96
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.24
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.03
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.94
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.71
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.03
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.12
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.99
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.79
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.79
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.56
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.43
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.37
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.66
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.17
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.53
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	11.32
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	10.38
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.00
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.38
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.06
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.30
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.17
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.80
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.