Gene detail

Detailed information of OS493_004831-T1 in Lophelia pertusa

Genomic Location: scaffold_10:92118...93799
NR annotation: KAJ7374494.1, fat storage-inducing transmembrane protein 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6AX73	Acyl-coenzyme A diphosphatase FITM2 OS=Xenopus laevis OX=8355 GN=fitm2 PE=2 SV=1
Q8N6M3	Acyl-coenzyme A diphosphatase FITM2 OS=Homo sapiens OX=9606 GN=FITM2 PE=1 SV=1
P59266	Acyl-coenzyme A diphosphatase FITM2 OS=Mus musculus OX=10090 GN=Fitm2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009575 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10261 all species →	FIT	Fat storage-inducing transmembrane protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019388 all species →	Family	Fat storage-inducing transmembrane protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23129 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0010945 all species →	Molecular Function	coenzyme A diphosphatase activity	Interproscan
GO:0019915 all species →	Biological Process	lipid storage	Interproscan
GO:0008654 all species →	Biological Process	phospholipid biosynthetic process	Interproscan
GO:0030176 all species →	Cellular Component	obsolete integral component of endoplasmic reticulum membrane	Interproscan
GO:0034389 all species →	Biological Process	lipid droplet organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_004831-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_004831-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

21.3Max TPM

4.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	15	2.48	5.03
polyp at pH7 6	18	17	3.57	7.67
coral polyp · control treatment	16	16	6.86	17.41
coral polyp · oil and dispersant treatment	16	16	5.70	21.31
coral polyp · oil treatment	16	16	6.85	10.05
coral polyp · dispersant treatment	16	16	3.56	6.46
Polyp	10	10	5.61	10.03

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.03
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.71
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.54
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.98
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.82
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.18
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.89
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.77
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.59
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.50
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.44
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.86
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.83
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.44
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.12
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.67
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.05
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.56
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.43
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.35
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.31
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.24
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.11
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.87
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.79
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.73
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.72
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.49
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.23
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.20
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.76
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.79
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.41
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.59
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.40
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.32
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.31
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.07
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.84
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.21
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.21
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.14
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.74
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.33
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.29
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.72
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.37
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.88
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.31
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.18
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.75
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.98
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.29
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.87
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.64
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.63
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.55
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.49
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.37
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.94
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.87
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.48
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.00
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.81
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.05
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.36
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.04
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.97
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.79
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.43
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.38
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.32
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.30
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.96
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.79
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.64
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.11
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.10
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.82
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.51
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.46
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.94
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.54
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.54
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.37
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.06
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.17
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.13
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.09
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.02
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.88
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.86
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.84
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.68
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.55
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.79
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	10.03
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	9.73
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	8.88
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.25
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.63
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.02
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.34
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.32
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.85
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	2.06

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.