Gene detail

Detailed information of OS493_004832-T1 in Lophelia pertusa

Genomic Location: scaffold_10:94739...98673
NR annotation: KAJ7374495.1, Mitochondrial import inner membrane translocase subunit Tim21 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5XKA2	Mitochondrial import inner membrane translocase subunit Tim21 OS=Xenopus laevis OX=8355 GN=timm21 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007538 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08294 all species →	TIM21	TIM21	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038552 all species →	Homologous_superfamily	Tim21 IMS domain superfamily	Interproscan
IPR013261 all species →	Family	Mitochondrial import inner membrane translocase subunit Tim21	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13032 all species →	MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM21	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005744 all species →	Cellular Component	TIM23 mitochondrial import inner membrane translocase complex	Interproscan
GO:0030150 all species →	Biological Process	protein import into mitochondrial matrix	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17796	TIM21; mitochondrial import inner membrane translocase subunit TIM21	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_004832-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

36.6Max TPM

13.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	15.96	23.78
polyp at pH7 6	18	18	18.26	32.39
coral polyp · control treatment	16	16	15.16	21.48
coral polyp · oil and dispersant treatment	16	16	10.19	20.40
coral polyp · oil treatment	16	16	13.92	24.63
coral polyp · dispersant treatment	16	16	7.72	16.23
Polyp	10	9	12.89	36.56

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.78
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.64
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.30
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.80
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.74
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.22
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.74
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.23
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.69
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.30
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.25
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.96
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.82
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.89
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.77
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.16
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.68
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.29
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.39
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.13
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.79
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.69
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.28
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.20
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.71
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.51
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.24
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.69
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.51
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.84
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.43
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.40
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.18
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.85
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.76
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.04
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.48
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.32
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.77
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.11
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.81
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.50
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.50
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.60
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.67
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.42
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.32
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.30
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.17
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.08
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.82
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.68
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.40
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.14
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.81
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.75
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.65
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.81
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.33
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.92
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.71
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.22
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.08
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.65
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.37
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.18
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.14
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.92
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.63
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.55
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.83
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.22
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.00
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.77
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.48
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.52
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.47
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.30
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.52
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.44
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.18
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.53
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.57
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.71
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.23
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.18
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.69
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.22
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.64
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.01
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.87
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.69
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.74
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.19
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.10
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.80
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.72
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.14
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.12
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.19
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	36.56
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	15.32
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	14.37
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	13.53
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	12.98
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	12.37
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	9.10
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	7.68
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	7.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.