Gene detail

Detailed information of OS493_004911-T1 in Lophelia pertusa

Genomic Location: scaffold_10:932352...937112
NR annotation: KAJ7374573.1, hypothetical protein OS493_004911 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P08217	Chymotrypsin-like elastase family member 2A OS=Homo sapiens OX=9606 GN=CELA2A PE=1 SV=1
P21956	Lactadherin OS=Mus musculus OX=10090 GN=Mfge8 PE=1 SV=3
P70490	Lactadherin OS=Rattus norvegicus OX=10116 GN=Mfge8 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011302 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00754 all species →	F5_F8_type_C	F5/8 type C domain	Domain	Interproscan
PF00089 all species →	Trypsin	Trypsin	Domain	Interproscan
PF01549 all species →	ShK	ShK domain-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000421 all species →	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR043504 all species →	Homologous_superfamily	Peptidase S1, PA clan, chymotrypsin-like fold	Interproscan
IPR001254 all species →	Domain	Serine proteases, trypsin domain	Interproscan
IPR009003 all species →	Homologous_superfamily	Peptidase S1, PA clan	Interproscan
IPR033116 all species →	Active_site	Serine proteases, trypsin family, serine active site	Interproscan
IPR003582 all species →	Domain	ShKT domain	Interproscan
IPR050850 all species →	Family	Peptidase S1 family, Elastase subfamily	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24257 all species →	CHYMOTRYPSIN-LIKE ELASTASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004252 all species →	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_004911-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_004911-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

264.6Max TPM

46.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	18.39	27.24
polyp at pH7 6	18	18	20.82	45.39
coral polyp · control treatment	16	16	34.04	96.82
coral polyp · oil and dispersant treatment	16	16	70.99	140.50
coral polyp · oil treatment	16	16	39.22	89.06
coral polyp · dispersant treatment	16	16	116.21	264.56
Polyp	10	10	25.35	93.47

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.24
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.86
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.13
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.01
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.58
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.20
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.02
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.83
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.58
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.63
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.49
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.07
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.86
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.95
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.28
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.00
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.95
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.32
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.39
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.35
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.86
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.34
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.97
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.16
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.77
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.45
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.15
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.79
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.30
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.25
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.06
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.13
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.08
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.90
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.75
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.01
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	96.82
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.32
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.85
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.71
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.66
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.87
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.45
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.07
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.75
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.68
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.01
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.18
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.74
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.57
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.52
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.36
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	140.50
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	122.17
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	112.08
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	93.39
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	91.47
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	81.74
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	74.60
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.90
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.73
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	54.27
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.58
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.38
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.36
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.92
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.86
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.95
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	89.06
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	75.66
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	65.45
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	59.40
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.21
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.97
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.12
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.64
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.31
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.54
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.43
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.30
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.02
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.55
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.39
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.45
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	264.56
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	184.63
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	181.13
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	161.00
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	160.11
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	151.15
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	138.53
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	134.23
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	120.52
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	80.92
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	64.33
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	63.51
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.41
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.36
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.94
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	93.47
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	74.04
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	50.02
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	10.79
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.57
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.01
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.06
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.40
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.43
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1.73

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.