Gene detail

Detailed information of OS493_004955-T1 in Lophelia pertusa

Genomic Location: scaffold_10:1378052...1383001
NR annotation: KAJ7374617.1, Ubiquinone biosynthesis protein coq9, mitochondrial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5RJV0	Ubiquinone biosynthesis protein COQ9, mitochondrial OS=Xenopus tropicalis OX=8364 GN=coq9 PE=2 SV=1
Q3B8B2	Ubiquinone biosynthesis protein COQ9-A, mitochondrial OS=Xenopus laevis OX=8355 GN=coq9-a PE=2 SV=2
Q5PPX7	Ubiquinone biosynthesis protein COQ9-B, mitochondrial OS=Xenopus laevis OX=8355 GN=coq9-b PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006955 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21392 all species →	COQ9_N	Ubiquinone biosynthesis protein COQ9, N-terminal domain	Domain	Interproscan
PF08511 all species →	COQ9	COQ9	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048674 all species →	Domain	Ubiquinone biosynthesis protein COQ9, HTH domain	Interproscan
IPR013718 all species →	Domain	COQ9, C-terminal domain	Interproscan
IPR012762 all species →	Family	Ubiquinone biosynthesis protein COQ9	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21427 all species →	UBIQUINONE BIOSYNTHESIS PROTEIN COQ9, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005743 all species →	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0006744 all species →	Biological Process	ubiquinone biosynthetic process	Interproscan
GO:0008289 all species →	Molecular Function	lipid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18587	COQ9; ubiquinone biosynthesis protein COQ9	-	Cofactor metabolism	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_004955-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

35.9Max TPM

17.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	21.25	35.45
polyp at pH7 6	18	18	19.68	33.72
coral polyp · control treatment	16	16	20.17	35.88
coral polyp · oil and dispersant treatment	16	16	12.05	32.01
coral polyp · oil treatment	16	16	20.98	33.66
coral polyp · dispersant treatment	16	16	11.30	21.69
Polyp	10	10	13.27	23.34

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.45
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.24
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.59
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.60
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.41
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.71
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.55
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.25
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.52
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.90
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.86
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.85
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.34
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.31
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.10
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.16
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.87
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.76
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.72
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.21
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.05
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.49
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.92
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.75
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.83
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.77
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.23
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.44
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.19
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.75
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.48
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.71
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.77
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.62
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.45
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.92
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.88
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.09
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.66
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.74
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.65
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.30
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.19
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.64
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.17
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.09
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.08
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.43
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.92
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.95
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.74
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.26
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.01
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.43
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.19
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.36
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.10
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.68
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.58
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.79
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.91
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.33
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.99
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.14
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.73
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.19
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.62
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.74
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.66
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.94
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.33
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.43
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.73
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.62
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.11
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.30
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.80
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.02
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.59
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.43
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.04
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.19
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.80
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.73
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.69
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.89
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.05
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.61
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.39
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.00
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.84
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.58
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.05
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.45
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.72
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.23
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.60
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.86
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.01
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.77
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	23.34
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	22.15
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	20.09
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	17.85
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	17.42
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	10.87
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	9.62
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	6.95
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.29
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.11

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.