Gene detail

Detailed information of OS493_004957-T1 in Lophelia pertusa

Genomic Location: scaffold_10:1398591...1414548
NR annotation: KAJ7374619.1, T-cell immunomodulatory protein [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8TB96	T-cell immunomodulatory protein OS=Homo sapiens OX=9606 GN=ITFG1 PE=1 SV=1
Q99KW9	T-cell immunomodulatory protein OS=Mus musculus OX=10090 GN=Itfg1 PE=1 SV=2
Q8R4E1	T-cell immunomodulatory protein OS=Rattus norvegicus OX=10116 GN=Itfg1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005566 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13517 all species →	FG-GAP_3	FG-GAP-like repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028994 all species →	Homologous_superfamily	Integrin alpha, N-terminal	Interproscan
IPR013517 all species →	Repeat	FG-GAP repeat	Interproscan
IPR024881 all species →	Family	T-cell immunomodulatory protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13412 all species →	T-CELL IMMUNOMODULATORY PROTEIN HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17257	ITFG1; integrin alpha FG-GAP repeat containing protein 1	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_004957-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

37.4Max TPM

15.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	15.84	30.37
polyp at pH7 6	18	18	15.16	26.00
coral polyp · control treatment	16	16	19.43	36.11
coral polyp · oil and dispersant treatment	16	16	15.76	26.78
coral polyp · oil treatment	16	16	18.59	37.36
coral polyp · dispersant treatment	16	16	11.70	21.72
Polyp	10	10	12.19	29.62

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.37
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.87
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.17
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.08
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.96
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.45
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.37
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.56
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.58
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.54
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.90
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.66
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.62
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.77
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.45
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.77
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.10
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.82
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.29
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.71
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.84
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.38
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.69
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.60
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.51
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.06
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.84
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.39
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.52
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.59
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.12
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.02
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.85
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.46
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.11
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.39
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.18
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.42
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.38
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.60
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.59
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.21
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.76
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.36
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.40
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.31
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.27
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.06
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.59
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.20
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.78
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.22
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.06
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.83
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.71
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.23
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.52
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.45
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.25
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.43
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.72
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.49
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.72
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.77
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.19
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.73
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.36
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.76
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.45
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.63
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.98
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.68
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.65
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.65
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.74
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.48
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.17
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.81
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.03
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.91
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.24
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.96
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.72
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.43
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.60
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.89
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.31
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.99
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.18
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.36
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.20
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.12
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.03
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.93
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.97
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.22
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.34
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.96
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	29.62
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	14.42
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	13.80
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	13.51
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	12.62
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	12.25
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	7.42
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	7.12
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	5.62
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.52

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.