Gene detail

Detailed information of OS493_004991-T1 in Lophelia pertusa

Genomic Location: scaffold_10:1746859...1748953
NR annotation: KAJ7374650.1, hypothetical protein OS493_004991 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010168 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01344 all species →	Kelch_1	Kelch motif	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015915 all species →	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR006652 all species →	Repeat	Kelch repeat type 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46344 all species →	OS02G0202900 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_004991-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_004991-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

56.7Max TPM

24.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	27.24	40.34
polyp at pH7 6	18	18	21.51	30.08
coral polyp · control treatment	16	16	26.20	37.95
coral polyp · oil and dispersant treatment	16	16	23.28	48.41
coral polyp · oil treatment	16	16	28.09	56.71
coral polyp · dispersant treatment	16	16	26.64	50.02
Polyp	10	10	10.76	20.20

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.34
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.46
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.92
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.56
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.95
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.57
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.30
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.55
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.43
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.22
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.74
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.07
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.05
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.56
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.40
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.04
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.21
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.98
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.08
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.71
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.62
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.55
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.00
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.34
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.10
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.54
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.96
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.67
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.39
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.54
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.63
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.54
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.81
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.26
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.74
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.63
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.95
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.79
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.21
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.95
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.02
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.83
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.68
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.05
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.01
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.16
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.13
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.64
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.35
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.10
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.54
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.83
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.41
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.01
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.69
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.19
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.34
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.16
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.33
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.70
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.12
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.34
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.45
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.74
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.95
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.31
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.34
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.34
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56.71
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.60
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.75
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.55
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.99
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.45
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.32
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.96
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.52
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.58
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.86
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.02
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.43
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.74
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.55
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.45
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.02
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.35
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.97
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.95
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.16
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.45
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.17
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.77
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.71
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.08
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.00
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.44
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.27
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.50
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.35
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.10
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	20.20
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	16.26
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	16.19
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	15.66
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	11.07
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	8.09
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	6.38
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.69
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.45
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.65

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.