Gene detail

Detailed information of OS493_004999-T1 in Lophelia pertusa

Genomic Location: scaffold_10:1808835...1816299
NR annotation: KAJ7374658.1, hypothetical protein OS493_004999 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P35668	Glutathione synthetase OS=Xenopus laevis OX=8355 GN=gss PE=2 SV=1
Q5EAC2	Glutathione synthetase OS=Bos taurus OX=9913 GN=GSS PE=2 SV=1
P51855	Glutathione synthetase OS=Mus musculus OX=10090 GN=Gss PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001307 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03917 all species →	GSH_synth_ATP	Eukaryotic glutathione synthase, ATP binding domain	Domain	Interproscan
PF03199 all species →	GSH_synthase	Eukaryotic glutathione synthase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005615 all species →	Family	Glutathione synthase	Interproscan
IPR016185 all species →	Homologous_superfamily	Pre-ATP-grasp domain superfamily	Interproscan
IPR014042 all species →	Homologous_superfamily	Glutathione synthase, alpha-helical	Interproscan
IPR014049 all species →	Homologous_superfamily	Glutathione synthase, N-terminal, eukaryotic	Interproscan
IPR004887 all species →	Domain	Glutathione synthase, substrate-binding domain	Interproscan
IPR014709 all species →	Homologous_superfamily	Glutathione synthase, C-terminal, eukaryotic	Interproscan
IPR037013 all species →	Homologous_superfamily	Glutathione synthase, substrate-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11130 all species →	GLUTATHIONE SYNTHETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004363 all species →	Molecular Function	glutathione synthase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006750 all species →	Biological Process	glutathione biosynthetic process	Interproscan
GO:0016874 all species →	Molecular Function	ligase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0043295 all species →	Molecular Function	glutathione binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21456	GSS; glutathione synthase	EC:6.3.2.3	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_004999-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

35.4Max TPM

14.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	14.24	19.43
polyp at pH7 6	18	18	15.27	27.19
coral polyp · control treatment	16	16	16.33	29.37
coral polyp · oil and dispersant treatment	16	16	13.18	30.87
coral polyp · oil treatment	16	16	15.00	26.74
coral polyp · dispersant treatment	16	16	15.16	35.39
Polyp	10	10	8.93	12.36

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.43
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.36
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.22
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.46
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.26
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.09
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.63
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.48
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.45
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.68
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.48
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.68
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.66
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.57
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.33
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.90
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.28
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.31
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.19
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.31
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.27
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.07
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.79
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.30
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.00
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.35
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.03
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.71
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.69
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.61
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.67
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.27
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.90
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.81
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.63
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.32
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.37
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.56
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.45
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.51
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.03
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.95
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.14
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.79
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.81
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.38
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.85
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.09
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.50
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.59
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.54
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.76
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.87
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.61
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.14
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.97
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.23
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.15
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.41
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.06
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.14
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.73
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.78
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.49
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.50
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.45
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.05
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.24
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.74
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.10
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.27
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.11
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.05
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.34
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.25
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.46
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.61
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.54
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.99
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.14
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.46
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.47
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.44
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.01
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.39
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.89
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.56
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.28
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.97
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.74
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.50
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.41
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.35
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.00
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.65
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.42
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.97
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.25
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.51
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.77
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	12.36
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	12.29
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	10.09
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	9.65
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	8.95
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	8.60
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	8.38
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	8.38
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.51
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.08

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.