Gene detail

Detailed information of OS493_005005-T1 in Lophelia pertusa

Genomic Location: scaffold_10:1847799...1850275
NR annotation: KAJ7374664.1, M-phase phosphoprotein 6 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q99547	M-phase phosphoprotein 6 OS=Homo sapiens OX=9606 GN=MPHOSPH6 PE=1 SV=2
Q9D1Q1	M-phase phosphoprotein 6 OS=Mus musculus OX=10090 GN=Mphosph6 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006041 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10175 all species →	MPP6	M-phase phosphoprotein 6	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019324 all species →	Family	M-phase phosphoprotein 6	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13582 all species →	M-PHASE PHOSPHOPROTEIN 6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000460 all species →	Biological Process	maturation of 5.8S rRNA	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12593	MPHOSPH6, MPP6; M-phase phosphoprotein 6, animal type	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_005005-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

26.3Max TPM

10.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	7.39	14.64
polyp at pH7 6	18	16	8.93	23.27
coral polyp · control treatment	16	16	14.03	26.30
coral polyp · oil and dispersant treatment	16	16	10.74	17.27
coral polyp · oil treatment	16	16	12.65	25.51
coral polyp · dispersant treatment	16	16	8.99	21.01
Polyp	10	9	9.36	17.84

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.64
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.80
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.73
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.34
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.64
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.87
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.86
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.50
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.28
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.15
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.05
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.71
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.60
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.46
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.01
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.79
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.69
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.85
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.27
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.73
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.97
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.42
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.31
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.75
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.63
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.80
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.58
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.25
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.84
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.97
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.84
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.03
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.77
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.52
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.30
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.43
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.43
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.93
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.09
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.18
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.38
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.36
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.09
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.03
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.40
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.74
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.56
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.63
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.27
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.64
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.27
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.58
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.06
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.12
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.85
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.83
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.58
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.18
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.89
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.58
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.14
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.81
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.55
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.45
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.32
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.59
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.51
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.21
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.41
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.51
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.94
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.82
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.98
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.85
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.66
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.48
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.43
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.34
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.88
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.60
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.84
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.91
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.01
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.07
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.53
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.98
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.06
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.56
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.39
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.21
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.91
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.74
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.25
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.26
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.80
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.55
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.43
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.12
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	17.84
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	15.73
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	15.52
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	10.28
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	10.04
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	9.72
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.21
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.30
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.96
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.