Gene detail

Detailed information of OS493_005008-T1 in Lophelia pertusa

Genomic Location: scaffold_10:1867352...1874255
NR annotation: KAJ7374667.1, Differentially expressed in FDCP 8 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4V8I4	Differentially expressed in FDCP 8 homolog OS=Rattus norvegicus OX=10116 GN=Def8 PE=1 SV=1
Q6ZN54	Differentially expressed in FDCP 8 homolog OS=Homo sapiens OX=9606 GN=DEF8 PE=1 SV=2
Q99J78	Differentially expressed in FDCP 8 OS=Mus musculus OX=10090 GN=Def8 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004661 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13901 all species →	RH_dom	Rubicon Homology Domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR025258 all species →	Domain	Rubicon Homology Domain	Interproscan
IPR051366 all species →	Family	Differentially Expressed in FDCP 8 Homolog	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12326 all species →	PLECKSTRIN HOMOLOGY DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_005008-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_005008-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_005008-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

38.6Max TPM

12.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	10.64	14.83
polyp at pH7 6	18	18	11.51	18.16
coral polyp · control treatment	16	16	17.12	37.65
coral polyp · oil and dispersant treatment	16	16	18.99	38.57
coral polyp · oil treatment	16	16	14.70	23.06
coral polyp · dispersant treatment	16	16	8.88	15.07
Polyp	10	9	6.83	12.57

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.83
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.67
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.31
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.53
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.47
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.18
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.92
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.62
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.50
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.24
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.09
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.09
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.96
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.86
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.44
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.93
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.16
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.69
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.16
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.55
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.63
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.95
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.53
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.44
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.41
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.22
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.01
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.29
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.17
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.72
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.67
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.14
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.12
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.36
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.42
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.36
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.65
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.31
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.85
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.49
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.45
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.38
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.14
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.11
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.91
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.85
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.71
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.45
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.13
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.93
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.89
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.65
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.57
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.23
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.83
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.56
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.52
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.73
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.86
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.52
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.30
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.83
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.27
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.25
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.10
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.65
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.48
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.21
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.06
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.33
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.94
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.22
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.33
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.95
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.58
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.47
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.65
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.52
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.14
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.97
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.17
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.78
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.48
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.58
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.07
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.58
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.66
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.84
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.79
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.64
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.08
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.95
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.29
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.15
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.87
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.62
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.61
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.04
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.79
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.05
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	12.57
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	10.28
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.43
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.26
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	7.98
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	6.42
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.94
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.53
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.87
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.