Gene detail

Detailed information of OS493_005021-T1 in Lophelia pertusa

Genomic Location: scaffold_10:1971325...1987183
NR annotation: KAJ7374679.1, peptidase M10A [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P09237	Matrilysin OS=Homo sapiens OX=9606 GN=MMP7 PE=1 SV=1
P22757	Hatching enzyme OS=Paracentrotus lividus OX=7656 PE=1 SV=1
Q28397	Stromelysin-1 OS=Equus caballus OX=9796 GN=MMP3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000392 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01471 all species →	PG_binding_1	Putative peptidoglycan binding domain	Domain	Interproscan
PF00413 all species →	Peptidase_M10	Matrixin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036366 all species →	Homologous_superfamily	PGBD superfamily	Interproscan
IPR033739 all species →	Domain	Peptidase M10A, catalytic domain	Interproscan
IPR021190 all species →	Family	Peptidase M10A	Interproscan
IPR002477 all species →	Domain	Peptidoglycan binding-like	Interproscan
IPR024079 all species →	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan
IPR001818 all species →	Domain	Peptidase M10, metallopeptidase	Interproscan
IPR036365 all species →	Homologous_superfamily	PGBD-like superfamily	Interproscan
IPR006026 all species →	Domain	Peptidase, metallopeptidase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10201 all species →	MATRIX METALLOPROTEINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0031012 all species →	Cellular Component	extracellular matrix	Interproscan
GO:0030198 all species →	Biological Process	extracellular matrix organization	Interproscan
GO:0030574 all species →	Biological Process	collagen catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_005021-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_005021-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

89.1Max TPM

19.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	25.44	56.34
polyp at pH7 6	18	18	30.95	87.08
coral polyp · control treatment	16	16	12.73	26.10
coral polyp · oil and dispersant treatment	16	16	15.56	41.79
coral polyp · oil treatment	16	16	27.08	89.15
coral polyp · dispersant treatment	16	16	11.99	72.66
Polyp	10	10	8.26	25.32

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	56.34
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	52.78
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.25
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.45
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.67
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.28
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.21
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.46
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.91
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.20
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.80
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.48
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.24
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.99
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.68
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.57
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.19
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.46
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	87.08
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	84.13
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	78.95
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	77.65
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.24
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.32
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.60
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.03
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.23
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.04
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.87
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.48
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.18
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.07
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.42
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.63
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.71
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.45
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.10
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.53
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.72
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.75
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.50
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.34
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.07
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.70
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.15
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.15
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.57
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.67
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.68
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.62
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.62
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.57
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.79
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.30
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.55
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.50
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.86
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.26
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.33
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.60
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.36
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.08
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.15
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.05
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.82
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.90
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.66
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.73
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	89.15
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	84.84
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.21
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.93
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.74
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.54
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.84
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.98
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.78
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.59
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.33
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.26
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.29
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.93
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.87
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.95
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	72.66
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.59
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.71
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.92
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.34
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.09
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.57
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.35
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.95
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.89
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.71
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.70
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.58
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.05
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.32
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.45
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	25.32
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	18.58
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	13.99
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	11.70
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.23
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.38
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.03
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1.47
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.64
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.26

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.