Gene detail

Detailed information of OS493_005029-T1 in Lophelia pertusa

Genomic Location: scaffold_10:2040885...2044516
NR annotation: KAJ7374687.1, NAD-dependent protein deacetylase sirtuin-7 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9FE17	NAD-dependent protein deacetylase SRT1 OS=Arabidopsis thaliana OX=3702 GN=SRT1 PE=1 SV=1
Q7XWV4	NAD-dependent protein deacetylase SRT1 OS=Oryza sativa subsp. japonica OX=39947 GN=SRT1 PE=1 SV=2
B8ARK7	NAD-dependent protein deacetylase SRT1 OS=Oryza sativa subsp. indica OX=39946 GN=SRT1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000904 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02146 all species →	SIR2	Sir2 family	Family	Interproscan
PF08603 all species →	CAP_C	Adenylate cyclase associated (CAP) C terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029035 all species →	Homologous_superfamily	DHS-like NAD/FAD-binding domain superfamily	Interproscan
IPR003000 all species →	Family	Sirtuin family	Interproscan
IPR026590 all species →	Domain	Sirtuin family, catalytic core domain	Interproscan
IPR036223 all species →	Homologous_superfamily	Adenylate cyclase-associated CAP, C-terminal superfamily	Interproscan
IPR050134 all species →	Family	NAD-dependent sirtuin protein deacylases	Interproscan
IPR013912 all species →	Domain	Adenylate cyclase-associated CAP, C-terminal	Interproscan
IPR016098 all species →	Homologous_superfamily	Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11085 all species →	NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0070403 all species →	Molecular Function	NAD+ binding	Interproscan
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0003714 all species →	Molecular Function	transcription corepressor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0007010 all species →	Biological Process	cytoskeleton organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11416	SIRT6, SIR2L6; NAD-dependent protein deacetylase sirtuin 6	EC:2.3.1.286	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_005029-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

111.0Max TPM

17.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	7.97	12.75
polyp at pH7 6	18	18	9.35	21.36
coral polyp · control treatment	16	16	15.37	26.46
coral polyp · oil and dispersant treatment	16	16	27.07	45.93
coral polyp · oil treatment	16	16	9.12	13.65
coral polyp · dispersant treatment	16	16	48.34	110.98
Polyp	10	10	5.36	9.29

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.75
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.42
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.48
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.91
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.66
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.75
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.81
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.00
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.68
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.61
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.93
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.07
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.90
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.60
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.12
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.96
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.61
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.19
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.36
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.34
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.73
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.28
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.35
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.81
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.80
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.75
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.68
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.63
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.44
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.37
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.83
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.08
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.07
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.84
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.56
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.30
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.46
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.08
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.65
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.26
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.88
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.00
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.06
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.79
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.42
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.60
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.52
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.19
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.78
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.70
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.01
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.44
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.93
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.57
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.32
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.96
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.87
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.74
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.70
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.77
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.77
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.00
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.16
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.07
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.62
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.11
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.34
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.17
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.65
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.77
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.56
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.28
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.06
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.54
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.25
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.62
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.44
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.65
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.60
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.37
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.18
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.44
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.06
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.45
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	110.98
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	101.03
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	99.84
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	78.62
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	63.04
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.23
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.51
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.78
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.70
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.27
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.05
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.07
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.44
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.83
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.85
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.19
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	9.29
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.18
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	7.15
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	7.11
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.92
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	4.36
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.59
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.29
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.77

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.