Gene detail

Detailed information of OS493_005032-T1 in Lophelia pertusa

Genomic Location: scaffold_10:2055562...2057906
NR annotation: KAJ7374690.1, hypothetical protein OS493_005032 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q08BG1	Transmembrane protein with metallophosphoesterase domain OS=Danio rerio OX=7955 GN=tmppe PE=2 SV=1
Q09320	Putative metallophosphoesterase F40B5.2 OS=Caenorhabditis elegans OX=6239 GN=F40B5.2 PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004098 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00149 all species →	Metallophos	Calcineurin-like phosphoesterase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051158 all species →	Family	Metallophosphoesterase superfamily	Interproscan
IPR004843 all species →	Domain	Calcineurin-like phosphoesterase domain, ApaH type	Interproscan
IPR029052 all species →	Homologous_superfamily	Metallo-dependent phosphatase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31302 all species →	TRANSMEMBRANE PROTEIN WITH METALLOPHOSPHOESTERASE DOMAIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07098	K07098; uncharacterized protein	-	Function unknown	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_005032-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

7.5Max TPM

3.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	2.88	5.61
polyp at pH7 6	18	18	3.18	4.62
coral polyp · control treatment	16	16	4.35	7.32
coral polyp · oil and dispersant treatment	16	16	3.94	7.52
coral polyp · oil treatment	16	16	4.09	6.44
coral polyp · dispersant treatment	16	16	2.48	4.88
Polyp	10	10	2.28	4.33

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.61
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.50
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.92
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.39
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.16
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.02
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.94
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.89
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.86
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.34
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.25
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.13
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.00
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.91
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.81
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.72
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.60
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.71
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.62
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.38
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.20
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.07
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.87
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.82
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.77
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.71
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.22
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.92
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.92
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.90
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.67
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.62
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.57
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.29
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.56
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.09
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.32
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.89
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.73
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.69
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.54
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.07
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.83
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.71
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.34
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.75
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.21
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.14
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.04
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.88
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.87
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.57
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.52
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.11
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.70
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.58
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.25
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.36
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.16
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.78
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.12
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.01
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.60
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.39
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.37
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.23
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.98
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.93
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.44
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.01
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.58
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.21
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.16
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.05
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.67
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.99
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.90
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.51
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.30
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.08
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.76
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.75
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.13
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.92
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.88
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.91
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.89
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.17
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.66
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.63
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.63
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.54
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.53
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.51
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.30
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.55
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.40
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.31
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.24
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.50
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.33
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.94
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.78
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.61
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.48
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.32
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.06
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	1.60
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.04
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.67

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.