Gene detail

Detailed information of OS493_005128-T1 in Lophelia pertusa

Genomic Location: scaffold_10:3144916...3148999
NR annotation: KAJ7374778.1, hypothetical protein OS493_005128 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q91820	Aurora kinase A-A OS=Xenopus laevis OX=8355 GN=aurka-a PE=1 SV=1
Q91819	Aurora kinase A-B OS=Xenopus laevis OX=8355 GN=aurka-b PE=2 SV=3
D7UQM5	Aurora kinase OS=Patiria pectinifera OX=7594 GN=aur PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007670 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR030616 all species →	Family	Aurora kinase-like	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24350 all species →	SERINE/THREONINE-PROTEIN KINASE IAL-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000776 all species →	Cellular Component	kinetochore	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005876 all species →	Cellular Component	spindle microtubule	Interproscan
GO:0007052 all species →	Biological Process	mitotic spindle organization	Interproscan
GO:0031616 all species →	Cellular Component	spindle pole centrosome	Interproscan
GO:0032133 all species →	Cellular Component	chromosome passenger complex	Interproscan
GO:0032465 all species →	Biological Process	regulation of cytokinesis	Interproscan
GO:0035174 all species →	Molecular Function	obsolete histone serine kinase activity	Interproscan
GO:0051233 all species →	Cellular Component	spindle midzone	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11481	AURKA; aurora kinase A	EC:2.7.11.1	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_005128-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

31.2Max TPM

6.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	5.52	11.62
polyp at pH7 6	18	18	6.68	12.97
coral polyp · control treatment	16	16	9.01	30.60
coral polyp · oil and dispersant treatment	16	16	6.26	31.18
coral polyp · oil treatment	16	16	7.92	17.84
coral polyp · dispersant treatment	16	16	6.17	17.61
Polyp	10	9	4.59	18.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.62
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.50
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.23
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.17
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.95
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.73
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.64
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.83
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.23
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.13
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.97
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.47
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.43
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.93
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.12
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.05
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.80
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.57
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.97
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.55
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.18
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.02
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.40
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.12
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.31
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.79
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.60
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.18
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.01
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.67
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.49
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.35
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.34
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.97
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.00
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.32
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.60
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.58
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.55
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.67
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.75
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.27
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.49
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.43
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.21
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.06
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.26
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.53
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.12
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.87
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.75
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.97
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.18
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.21
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.23
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.40
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.67
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.54
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.39
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.01
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.66
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.21
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.46
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.93
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.91
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.57
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.32
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.48
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.84
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.06
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.84
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.65
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.96
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.73
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.77
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.77
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.29
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.18
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.70
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.68
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.12
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.70
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.60
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.80
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.61
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.13
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.20
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.70
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.30
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.41
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.40
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.31
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.29
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.44
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.96
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.94
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.34
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.29
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.88
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.50
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	18.00
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.52
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.80
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.02
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.25
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.17
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.66
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.97
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.49
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.