Gene detail

Detailed information of OS493_005142-T1 in Lophelia pertusa

Genomic Location: scaffold_10:3268818...3270339
NR annotation: KAJ7374792.1, ndufb9, NADH-ubiquinone oxidoreductase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0MQE9	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Gorilla gorilla gorilla OX=9595 GN=NDUFB9 PE=2 SV=3
Q9Y6M9	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Homo sapiens OX=9606 GN=NDUFB9 PE=1 SV=3
Q0MQF0	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Pan troglodytes OX=9598 GN=NDUFB9 PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009436 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05347 all species →	Complex1_LYR	Complex 1 protein (LYR family)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045292 all species →	Domain	NDUFB9, LYR domain	Interproscan
IPR033034 all species →	Family	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9	Interproscan
IPR008011 all species →	Domain	Complex 1 LYR protein domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12868 all species →	NADH-UBIQUINONE OXIDOREDUCTASE B22 SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005747 all species →	Cellular Component	obsolete mitochondrial respiratory chain complex I	Interproscan
GO:0006120 all species →	Biological Process	mitochondrial electron transport, NADH to ubiquinone	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_005142-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_005142-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

355.1Max TPM

61.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	65.03	89.87
polyp at pH7 6	18	18	78.35	147.68
coral polyp · control treatment	16	16	65.88	266.62
coral polyp · oil and dispersant treatment	16	16	58.18	355.14
coral polyp · oil treatment	16	16	52.32	64.40
coral polyp · dispersant treatment	16	16	31.46	61.43
Polyp	10	10	88.52	124.57

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	89.87
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	79.62
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	78.58
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	74.79
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	73.95
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	72.07
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	71.94
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	64.75
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	62.57
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	62.13
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	60.17
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	58.63
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	58.28
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	57.44
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	56.54
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.92
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.76
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.55
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	147.68
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	140.62
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	84.13
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	82.22
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	79.86
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	77.96
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	76.76
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	76.07
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	72.97
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	72.29
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	71.95
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	66.08
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	64.32
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	61.33
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	60.49
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	60.44
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.55
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	55.58
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	266.62
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	73.36
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	67.17
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	66.48
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	59.78
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.83
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.80
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.71
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.93
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.62
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.84
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.66
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.95
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.55
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.64
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.07
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	355.14
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.68
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.01
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.38
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.23
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.53
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.28
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.14
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.26
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.55
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.43
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.06
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.38
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.38
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.04
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.43
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	64.40
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	64.39
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	61.96
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	61.49
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	60.76
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	60.70
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.48
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.21
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.32
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.57
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.10
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.25
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.34
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.82
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.33
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.01
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	61.43
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	55.70
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.61
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.94
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.31
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.04
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.09
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.07
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.86
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.03
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.51
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.61
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.46
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.87
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.55
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.26
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	124.57
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	119.68
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	100.07
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	99.67
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	87.17
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	76.49
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	72.98
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	70.94
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	70.27
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	63.40

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.