Gene detail

Detailed information of OS493_005206-T1 in Lophelia pertusa

Genomic Location: scaffold_10:3990495...4002086
NR annotation: KAJ7374853.1, SAM domain and HD [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q502K2	Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 OS=Danio rerio OX=7955 GN=samhd1 PE=2 SV=2
Q6INN8	Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 OS=Xenopus laevis OX=8355 GN=samhd1 PE=1 SV=2
Q9Y3Z3	Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 OS=Homo sapiens OX=9606 GN=SAMHD1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001427 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01966 all species →	HD	HD domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006674 all species →	Domain	HD domain	Interproscan
IPR003607 all species →	Domain	HD/PDEase domain	Interproscan
IPR050135 all species →	Family	Deoxyguanosinetriphosphate Triphosphohydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11373 all species →	DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006203 all species →	Biological Process	dGTP catabolic process	Interproscan
GO:0008832 all species →	Molecular Function	dGTPase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22544	SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1	EC:3.1.5.-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_005206-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

20.3Max TPM

10.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	12.80	19.10
polyp at pH7 6	18	18	13.54	20.31
coral polyp · control treatment	16	16	11.24	14.48
coral polyp · oil and dispersant treatment	16	16	8.60	12.14
coral polyp · oil treatment	16	16	10.82	14.75
coral polyp · dispersant treatment	16	16	6.41	10.41
Polyp	10	10	7.69	10.56

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.10
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.69
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.56
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.83
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.76
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.31
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.98
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.72
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.71
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.64
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.47
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.21
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.14
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.97
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.91
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.90
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.55
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.99
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.31
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.91
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.84
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.06
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.62
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.50
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.24
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.23
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.95
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.75
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.70
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.35
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.04
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.67
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.30
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.84
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.39
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.48
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.26
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.99
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.87
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.81
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.42
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.33
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.27
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.11
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.28
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.24
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.95
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.71
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.72
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.57
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.88
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.14
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.21
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.55
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.47
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.31
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.87
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.55
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.08
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.44
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.71
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.69
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.13
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.13
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.33
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.05
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.85
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.75
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.41
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.90
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.38
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.25
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.66
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.45
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.34
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.23
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.11
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.28
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.56
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.44
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.35
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.25
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.72
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.41
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.10
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.02
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.00
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.92
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.62
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.19
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.50
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.47
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.19
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.79
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.62
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.73
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.38
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.11
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.49
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	10.56
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	10.24
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	9.96
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	9.86
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	8.16
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	7.50
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.31
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.85
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.59
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	3.91

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.