Gene detail

Detailed information of OS493_005277-T1 in Lophelia pertusa

Genomic Location: scaffold_10:4690431...4691944
NR annotation: KAJ7374919.1, BolA-like protein 3 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8CEI1	BolA-like protein 3 OS=Mus musculus OX=10090 GN=Bola3 PE=1 SV=1
Q53S33	BolA-like protein 3 OS=Homo sapiens OX=9606 GN=BOLA3 PE=1 SV=1
Q3SZ84	BolA-like protein 3 OS=Bos taurus OX=9913 GN=BOLA3 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001382 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01722 all species →	BolA	BolA-like protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036065 all species →	Homologous_superfamily	BolA-like superfamily	Interproscan
IPR002634 all species →	Family	BolA protein	Interproscan
IPR052275 all species →	Family	Mitochondrial Fe-S cluster assembly factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46188 all species →	BOLA-LIKE PROTEIN 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005759 all species →	Cellular Component	mitochondrial matrix	Interproscan
GO:0106035 all species →	Biological Process	protein maturation by [4Fe-4S] cluster transfer	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22075	BOLA3; BolA-like protein 3	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_005277-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

52.4Max TPM

20.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	12.87	19.00
polyp at pH7 6	18	16	12.08	22.62
coral polyp · control treatment	16	16	29.15	41.53
coral polyp · oil and dispersant treatment	16	16	30.61	52.36
coral polyp · oil treatment	16	16	24.28	35.57
coral polyp · dispersant treatment	16	16	16.49	26.44
Polyp	10	9	16.53	31.26

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.00
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.62
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.08
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.58
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.51
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.36
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.84
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.67
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.44
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.21
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.12
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.09
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.44
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.95
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.20
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.94
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.51
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.05
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.62
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.44
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.28
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.27
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.30
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.82
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.80
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.79
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.96
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.80
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.70
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.44
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.05
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.83
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.78
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.51
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.53
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.18
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.86
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.86
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.51
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.47
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.83
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.58
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.69
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.94
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.76
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.56
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.18
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.59
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.76
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.10
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.36
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.24
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.85
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.83
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.82
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.71
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.15
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.82
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.06
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.39
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.04
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.01
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.27
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.23
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.11
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.80
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.57
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.40
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.56
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.51
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.34
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.81
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.46
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.32
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.85
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.43
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.16
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.96
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.38
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.53
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.69
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.47
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.44
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.12
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.61
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.02
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.36
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.69
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.10
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.25
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.67
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.25
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.53
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.03
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.19
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.84
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.69
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.99
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	31.26
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	24.14
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	23.79
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	23.72
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	19.29
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	14.88
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	12.29
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	12.05
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.88
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.