Gene detail

Detailed information of OS493_005358-T1 in Lophelia pertusa

Genomic Location: scaffold_11:669675...673202
NR annotation: KAJ7365261.1, hypothetical protein OS493_005358 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007159 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for OS493_005358-T1 in Lophelia pertusa.

InterPro

InterPro term	Type	Description	Source
IPR051147 all species →	Family	Cilia- and flagella-associated domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21683 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for OS493_005358-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_005358-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_005358-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

33.1Max TPM

15.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	16.38	25.21
polyp at pH7 6	18	18	16.56	26.14
coral polyp · control treatment	16	16	16.85	33.11
coral polyp · oil and dispersant treatment	16	16	14.08	28.91
coral polyp · oil treatment	16	16	16.08	21.87
coral polyp · dispersant treatment	16	16	8.95	16.01
Polyp	10	10	18.74	30.59

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.21
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.71
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.71
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.98
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.97
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.42
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.92
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.29
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.25
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.43
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.09
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.74
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.95
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.43
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.96
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.70
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.61
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.43
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.14
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.94
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.44
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.45
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.35
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.46
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.55
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.41
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.32
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.86
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.76
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.75
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.52
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.47
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.66
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.32
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.03
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.60
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.11
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.75
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.06
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.77
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.85
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.59
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.16
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.12
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.55
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.51
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.69
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.05
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.15
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.78
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.53
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.95
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.91
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.14
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.40
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.99
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.89
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.65
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.73
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.34
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.20
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.11
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.72
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.84
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.08
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.50
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.97
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.84
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.87
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.85
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.32
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.90
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.35
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.10
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.42
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.66
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.18
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.74
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.17
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.41
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.32
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.18
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.07
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.80
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.01
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.16
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.05
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.78
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.47
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.21
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.49
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.14
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.53
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.33
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.97
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.91
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.28
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.77
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.67
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.44
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	30.59
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	23.85
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	23.52
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	22.20
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	21.91
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	18.44
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	17.79
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	13.68
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	9.60
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.77

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.