Gene detail

Detailed information of OS493_005403-T1 in Lophelia pertusa

Genomic Location: scaffold_11:1081445...1087363
NR annotation: KAJ7365299.1, hypothetical protein OS493_005403 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008656 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_005403-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR046359 all species →	Family	Aftiphilin-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16156 all species →	AFTIPHILIN A-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030121 all species →	Cellular Component	AP-1 adaptor complex	Interproscan
GO:0030276 all species →	Molecular Function	clathrin binding	Interproscan
GO:0032588 all species →	Cellular Component	trans-Golgi network membrane	Interproscan
GO:0046907 all species →	Biological Process	intracellular transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_005403-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_005403-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

41.2Max TPM

15.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	14.88	23.16
polyp at pH7 6	18	18	15.80	20.98
coral polyp · control treatment	16	16	17.03	34.35
coral polyp · oil and dispersant treatment	16	16	19.06	32.64
coral polyp · oil treatment	16	16	14.26	19.78
coral polyp · dispersant treatment	16	16	15.69	41.15
Polyp	10	10	6.78	12.74

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.16
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.05
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.45
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.66
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.39
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.34
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.13
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.59
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.76
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.31
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.19
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.95
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.76
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.73
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.76
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.59
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.51
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.51
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.98
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.12
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.40
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.89
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.55
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.90
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.79
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.47
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.19
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.79
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.89
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.57
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.12
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.83
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.35
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.95
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.86
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.80
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.35
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.47
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.11
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.36
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.20
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.95
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.84
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.61
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.48
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.46
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.03
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.52
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.10
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.94
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.63
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.45
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.64
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.13
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.26
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.25
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.90
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.06
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.16
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.06
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.59
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.36
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.17
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.48
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.47
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.67
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.56
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.23
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.78
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.73
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.59
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.18
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.02
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.44
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.26
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.61
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.90
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.58
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.91
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.75
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.72
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.18
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.49
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.03
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.15
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.45
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.99
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.38
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.15
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.34
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.69
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.44
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.42
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.00
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.45
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.88
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.61
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.81
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.16
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.06
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	12.74
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	8.58
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.28
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	8.03
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.90
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.90
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.14
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.56
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	4.37
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.27

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.