Gene detail

Detailed information of OS493_005405-T1 in Lophelia pertusa

Genomic Location: scaffold_11:1091144...1093863
NR annotation: KAJ7365301.1, nudix (nucleoside diphosphate linked moiety X)-type motif 22 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8VYR2	Nudix hydrolase 9 OS=Arabidopsis thaliana OX=3702 GN=NUDT9 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006884 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for OS493_005405-T1 in Lophelia pertusa.

InterPro

InterPro term	Type	Description	Source
IPR015797 all species →	Homologous_superfamily	NUDIX hydrolase-like domain superfamily	Interproscan
IPR000086 all species →	Domain	NUDIX hydrolase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31835 all species →	URIDINE DIPHOSPHATE GLUCOSE PYROPHOSPHATASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0052751 all species →	Molecular Function	GDP-mannose hydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_005405-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_005405-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

15.3Max TPM

6.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.52	9.91
polyp at pH7 6	18	17	5.38	12.09
coral polyp · control treatment	16	16	7.99	15.34
coral polyp · oil and dispersant treatment	16	16	6.26	14.56
coral polyp · oil treatment	16	16	9.26	11.99
coral polyp · dispersant treatment	16	16	3.59	9.59
Polyp	10	10	6.52	9.25

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.91
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.63
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.50
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.59
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.59
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.59
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.54
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.08
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.75
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.58
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.24
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.42
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.21
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.06
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.76
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.29
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.03
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.65
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.09
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.48
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.36
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.82
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.65
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.99
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.74
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.57
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.16
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.89
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.84
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.76
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.53
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.36
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.91
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.74
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.01
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.34
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.78
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.61
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.88
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.04
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.63
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.91
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.79
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.52
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.83
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.80
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.53
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.07
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.04
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.15
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.56
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.69
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.60
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.47
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.26
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.79
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.30
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.82
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.65
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.53
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.53
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.04
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.81
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.50
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.28
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.27
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.99
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.79
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.57
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.93
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.49
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.34
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.26
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.02
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.37
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.87
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.73
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.87
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.83
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.94
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.27
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.84
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.59
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.68
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.68
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.18
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.21
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.25
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.21
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.01
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.73
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.71
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.38
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.20
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.09
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.30
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.29
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.88
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	9.25
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	9.03
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	8.78
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.19
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.79
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.78
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	5.70
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.75
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.96
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.95

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.