Gene detail

Detailed information of OS493_005406-T1 in Lophelia pertusa

Genomic Location: scaffold_11:1094186...1095459
NR annotation: KAJ7365302.1, Radial spoke head protein 9 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5TYW6	Radial spoke head protein 9 homolog OS=Danio rerio OX=7955 GN=rsph9 PE=1 SV=1
Q2KIU7	Radial spoke head protein 9 homolog OS=Bos taurus OX=9913 GN=RSPH9 PE=2 SV=1
Q9D9V4	Radial spoke head protein 9 homolog OS=Mus musculus OX=10090 GN=Rsph9 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008897 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04712 all species →	Radial_spoke	Radial spokehead-like protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006802 all species →	Family	Radial spokehead-like protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22069 all species →	MITOCHONDRIAL RIBOSOMAL PROTEIN S18	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001534 all species →	Cellular Component	radial spoke	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan
GO:0060294 all species →	Biological Process	cilium movement involved in cell motility	Interproscan
GO:0005930 all species →	Cellular Component	axoneme	Interproscan
GO:0035082 all species →	Biological Process	axoneme assembly	Interproscan
GO:0044458 all species →	Biological Process	motile cilium assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_005406-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_005406-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

239.1Max TPM

36.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	25.41	42.59
polyp at pH7 6	18	18	19.43	30.62
coral polyp · control treatment	16	16	50.84	239.13
coral polyp · oil and dispersant treatment	16	16	47.34	232.17
coral polyp · oil treatment	16	16	32.00	44.99
coral polyp · dispersant treatment	16	16	52.30	90.41
Polyp	10	10	22.99	29.59

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.59
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.07
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.06
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.97
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.82
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.60
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.74
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.95
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.15
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.07
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.87
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.51
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.90
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.76
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.92
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.69
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.91
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.80
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.62
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.31
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.33
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.74
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.77
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.31
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.07
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.16
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.86
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.75
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.87
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.27
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.83
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.75
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.88
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.76
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.81
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.58
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	239.13
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	89.53
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.52
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.64
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.39
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.30
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.29
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.27
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.69
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.65
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.55
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.51
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.98
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.50
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.50
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.04
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	232.17
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	58.75
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.85
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.47
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.63
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.58
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.48
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.36
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.10
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.72
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.84
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.40
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.28
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.54
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.00
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.34
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.99
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.96
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.70
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.63
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.94
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.05
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.22
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.08
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.96
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.65
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.62
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.70
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.99
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.28
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.49
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.72
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	90.41
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	89.32
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	77.37
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	66.30
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	65.17
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	60.58
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	56.11
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	49.18
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	49.08
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.40
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.20
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.09
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.19
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.89
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.33
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.21
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	29.59
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	28.16
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	28.10
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	27.25
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	26.88
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	22.33
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	20.92
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	19.23
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	14.40
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	13.01

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.