Gene detail

Detailed information of OS493_005428-T1 in Lophelia pertusa

Genomic Location: scaffold_11:1210987...1211388
NR annotation: KAJ7365324.1, hypothetical protein OS493_005428 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2MHE4	Serine/threonine/tyrosine-protein kinase HT1 OS=Arabidopsis thaliana OX=3702 GN=HT1 PE=1 SV=1
Q9LFV3	Calcium/calmodulin-regulated receptor-like kinase 2 OS=Arabidopsis thaliana OX=3702 GN=CRLK2 PE=2 SV=1
A8R7E6	Chitin elicitor receptor kinase 1 OS=Arabidopsis thaliana OX=3702 GN=CERK1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000982 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR27001 all species →	OS01G0253100 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_005428-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_005428-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

100TPM > 0

7Conditions

8.6Max TPM

1.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	2.37	4.12
polyp at pH7 6	18	16	1.94	5.29
coral polyp · control treatment	16	16	2.17	4.62
coral polyp · oil and dispersant treatment	16	14	1.51	8.56
coral polyp · oil treatment	16	16	1.33	4.65
coral polyp · dispersant treatment	16	13	1.19	3.87
Polyp	10	8	1.26	2.65

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.12
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.96
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.60
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.57
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.50
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.27
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.25
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.93
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.18
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.06
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.01
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.81
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.61
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.59
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.29
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.23
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.69
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.29
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.34
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.97
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.32
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.11
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.03
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.00
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.79
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.49
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.43
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.22
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.12
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.96
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.86
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.62
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.36
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.96
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.15
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.81
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.72
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.50
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.32
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.06
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.60
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.10
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.90
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.88
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.79
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.65
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.29
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.56
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.31
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.09
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.58
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.57
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.31
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.17
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.08
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.01
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.66
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.54
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.54
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.36
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.31
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.65
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.10
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.04
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.73
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.66
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.54
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.41
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.31
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.16
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.15
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.07
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.43
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.42
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.41
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.26
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.01
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.87
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.96
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.97
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.64
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.59
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.49
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.21
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.98
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.95
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.83
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.62
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.57
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.43
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.65
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.56
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.41
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.40
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1.32
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.10
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.71
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.49
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.