Detailed information of OS493_005455-T1 in Lophelia pertusa

Genomic Location: scaffold_11:1439556...1448937
NR annotation: KAJ7365349.1, Transcriptional adapter 2-beta [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q86TJ2Transcriptional adapter 2-beta OS=Homo sapiens OX=9606 GN=TADA2B PE=1 SV=2
Q5RBN9Transcriptional adapter 2-beta OS=Pongo abelii OX=9601 GN=TADA2B PE=2 SV=1
Q6NRB5Transcriptional adapter 2-beta OS=Xenopus laevis OX=8355 GN=tada2b PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005581 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00569
all species →		ZZZinc finger, ZZ typeDomainInterproscan
PF00249
all species →		Myb_DNA-bindingMyb-like DNA-binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR017884
all species →		DomainSANT domainInterproscan
IPR043145
all species →		Homologous_superfamilyZinc finger, ZZ-type superfamilyInterproscan
IPR000433
all species →		DomainZinc finger, ZZ-typeInterproscan
IPR041983
all species →		DomainADA2-like, zinc finger, ZZ-typeInterproscan
IPR001005
all species →		DomainSANT/Myb domainInterproscan
IPR017930
all species →		DomainMyb domainInterproscan
IPR009057
all species →		Homologous_superfamilyHomeobox-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12374
all species →		TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003682
all species →		Molecular Functionchromatin bindingInterproscan
GO:0003713
all species →		Molecular Functiontranscription coactivator activityInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006338
all species →		Biological Processchromatin remodelingInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0070461
all species →		Cellular ComponentSAGA-type complexInterproscan
GO:0008270
all species →		Molecular Functionzinc ion bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K15127TADA2B; transcriptional adapter 2-beta-Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_005455-T1 global co-expression network
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