Gene detail

Detailed information of OS493_005462-T1 in Lophelia pertusa

Genomic Location: scaffold_11:1484270...1488927
NR annotation: KAJ7365356.1, E3 SUMO-protein ligase pias1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010834 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02891 all species →	zf-MIZ	MIZ/SP-RING zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004181 all species →	Domain	Zinc finger, MIZ-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10782 all species →	ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0000790 all species →	Cellular Component	chromatin	Interproscan
GO:0016925 all species →	Biological Process	protein sumoylation	Interproscan
GO:0061665 all species →	Molecular Function	SUMO ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_005462-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_005462-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

25.1Max TPM

5.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	5.62	9.44
polyp at pH7 6	18	18	5.47	8.91
coral polyp · control treatment	16	16	5.83	14.59
coral polyp · oil and dispersant treatment	16	16	3.97	16.56
coral polyp · oil treatment	16	16	5.60	9.08
coral polyp · dispersant treatment	16	16	3.14	6.06
Polyp	10	10	7.62	25.08

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.44
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.21
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.18
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.58
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.27
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.43
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.89
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.87
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.26
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.15
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.16
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.02
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.74
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.66
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.33
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.28
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.18
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.47
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.91
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.89
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.39
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.49
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.28
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.82
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.79
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.49
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.43
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.23
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.11
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.90
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.73
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.64
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.33
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.70
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.81
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.58
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.59
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.74
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.07
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.75
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.48
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.45
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.93
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.33
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.18
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.06
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.80
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.55
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.43
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.20
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.30
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.44
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.56
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.74
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.49
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.67
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.53
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.50
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.31
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.30
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.20
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.01
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.96
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.49
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.35
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.62
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.48
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.34
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.08
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.83
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.18
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.93
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.88
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.81
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.64
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.43
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.16
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.13
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.78
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.65
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.51
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.25
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.83
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.59
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.06
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.96
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.06
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.00
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.66
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.37
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.01
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.86
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.74
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.42
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.23
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.22
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.15
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.69
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.14
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.59
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	25.08
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	9.11
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	8.30
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	6.96
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.82
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.08
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.43
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.31
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.91
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.26

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.