Gene detail

Detailed information of OS493_005509-T1 in Lophelia pertusa

Genomic Location: scaffold_11:2022718...2025199
NR annotation: KAJ7365402.1, Protein frg1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P97376	Protein FRG1 OS=Mus musculus OX=10090 GN=Frg1 PE=1 SV=2
Q14331	Protein FRG1 OS=Homo sapiens OX=9606 GN=FRG1 PE=1 SV=1
Q9VWA8	Protein FRG1 homolog OS=Drosophila melanogaster OX=7227 GN=FRG1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008599 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06229 all species →	FRG1	FRG1-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010414 all species →	Family	Protein FRG1	Interproscan
IPR008999 all species →	Homologous_superfamily	Actin-crosslinking	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12928 all species →	FRG1 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan
GO:0055120 all species →	Cellular Component	striated muscle dense body	Interproscan
GO:0071013 all species →	Cellular Component	catalytic step 2 spliceosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_005509-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_005509-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

104TPM > 0

7Conditions

35.9Max TPM

9.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	8.49	14.68
polyp at pH7 6	18	13	6.34	11.93
coral polyp · control treatment	16	16	13.73	35.86
coral polyp · oil and dispersant treatment	16	16	10.77	28.44
coral polyp · oil treatment	16	16	11.79	20.82
coral polyp · dispersant treatment	16	15	7.30	19.38
Polyp	10	10	8.75	17.39

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.68
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.16
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.39
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.62
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.59
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.20
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.15
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.87
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.59
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.07
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.88
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.83
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.04
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.68
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.60
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.39
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.19
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.90
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.93
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.70
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.16
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.12
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.88
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.87
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.67
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.99
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.08
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.71
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.35
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.33
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.26
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.86
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.30
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.55
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.08
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.66
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.92
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.94
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.92
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.84
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.28
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.57
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.64
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.18
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.40
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.45
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.44
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.07
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.56
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.23
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.07
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.73
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.60
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.42
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.37
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.00
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.44
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.56
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.14
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.59
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.59
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.54
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.82
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.14
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.74
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.37
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.39
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.14
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.26
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.91
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.91
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.29
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.69
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.72
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.73
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.56
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.47
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.55
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.38
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.69
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.48
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.28
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.25
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.06
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.63
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.10
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.75
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.61
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.37
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.25
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.07
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.78
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.03
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	17.39
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	13.10
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	12.71
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	7.96
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	7.40
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.07
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	6.19
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.50
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.44
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.73

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.