Gene detail

Detailed information of OS493_005523-T1 in Lophelia pertusa

Genomic Location: scaffold_11:2183294...2190442
NR annotation: KAJ7365416.1, hypothetical protein OS493_005523 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9DB05	Alpha-soluble NSF attachment protein OS=Mus musculus OX=10090 GN=Napa PE=1 SV=1
P54921	Alpha-soluble NSF attachment protein OS=Rattus norvegicus OX=10116 GN=Napa PE=1 SV=2
P54920	Alpha-soluble NSF attachment protein OS=Homo sapiens OX=9606 GN=NAPA PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007994 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14938 all species →	SNAP	Soluble NSF attachment protein, SNAP	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000744 all species →	Family	NSF attachment protein	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13768 all species →	SOLUBLE NSF ATTACHMENT PROTEIN SNAP	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005483 all species →	Molecular Function	soluble NSF attachment protein activity	Interproscan
GO:0005774 all species →	Cellular Component	vacuolar membrane	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0019905 all species →	Molecular Function	syntaxin binding	Interproscan
GO:0031201 all species →	Cellular Component	SNARE complex	Interproscan
GO:0035494 all species →	Biological Process	SNARE complex disassembly	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15296	NAPA, SNAPA, SEC17; alpha-soluble NSF attachment protein	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_005523-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

186.3Max TPM

79.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	47.77	68.04
polyp at pH7 6	18	18	51.33	62.12
coral polyp · control treatment	16	16	90.53	153.42
coral polyp · oil and dispersant treatment	16	16	127.40	186.28
coral polyp · oil treatment	16	16	81.40	110.43
coral polyp · dispersant treatment	16	16	94.60	180.91
Polyp	10	10	63.03	78.32

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	68.04
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	60.30
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	60.01
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	58.56
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.89
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.59
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.12
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.34
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.55
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.29
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.00
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.26
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.73
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.34
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.43
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.24
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.61
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.59
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	62.12
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	61.57
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	60.82
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.11
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	55.27
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.02
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.76
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.67
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.50
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.06
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.19
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.49
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.05
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.98
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.81
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.62
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.50
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.42
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	153.42
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	130.65
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	114.63
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	111.55
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	97.78
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	93.10
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	90.83
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	90.29
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	88.65
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	79.44
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	77.03
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	75.42
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	75.01
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	72.23
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.62
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.83
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	186.28
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	183.05
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	149.63
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	147.10
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	146.21
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	145.68
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	140.27
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	134.51
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	133.86
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	132.14
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	118.79
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	103.33
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	89.40
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	87.48
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	72.31
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	68.34
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	110.43
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	103.01
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	100.10
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	97.77
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	97.53
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	96.56
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	94.30
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	90.48
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	86.29
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	83.55
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	60.64
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	60.44
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.48
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56.31
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56.27
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.20
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	180.91
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	149.49
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	144.25
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	113.09
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	111.09
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	94.65
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	91.42
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	87.57
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	85.10
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	84.41
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	81.66
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	72.80
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	68.40
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	64.90
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	62.34
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.43
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	78.32
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	74.15
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	71.60
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	70.12
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	65.59
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	64.43
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	61.34
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	58.14
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	57.51
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	29.05

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.