Gene detail

Detailed information of OS493_005524-T1 in Lophelia pertusa

Genomic Location: scaffold_11:2190743...2199258
NR annotation: KAJ7365417.1, N-alpha-acetyltransferase 40 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NUH2	N-alpha-acetyltransferase 40 OS=Xenopus laevis OX=8355 GN=naa40 PE=2 SV=1
Q86UY6	N-alpha-acetyltransferase 40 OS=Homo sapiens OX=9606 GN=NAA40 PE=1 SV=1
Q8VE10	N-alpha-acetyltransferase 40 OS=Mus musculus OX=10090 GN=Naa40 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006374 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00583 all species →	Acetyltransf_1	Acetyltransferase (GNAT) family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039949 all species →	Family	N-alpha-acetyltransferase 40	Interproscan
IPR000182 all species →	Domain	GNAT domain	Interproscan
IPR016181 all species →	Homologous_superfamily	Acyl-CoA N-acyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20531 all species →	N-ALPHA-ACETYLTRANSFERASE 40	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0010485 all species →	Molecular Function	histone H4 acetyltransferase activity	Interproscan
GO:0043998 all species →	Molecular Function	histone H2A acetyltransferase activity	Interproscan
GO:1990189 all species →	Molecular Function	peptide-serine-alpha-N-acetyltransferase activity	Interproscan
GO:0016747 all species →	Molecular Function	acyltransferase activity, transferring groups other than amino-acyl groups	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20794	NAA40, NAT4; N-alpha-acetyltransferase 40	EC:2.3.1.257	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_005524-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

109.4Max TPM

21.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	19.96	38.03
polyp at pH7 6	18	18	23.23	42.74
coral polyp · control treatment	16	16	27.53	89.20
coral polyp · oil and dispersant treatment	16	16	21.55	109.44
coral polyp · oil treatment	16	16	23.02	41.81
coral polyp · dispersant treatment	16	16	14.57	33.35
Polyp	10	10	18.00	40.10

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.03
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.70
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.21
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.51
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.44
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.05
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.78
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.64
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.89
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.53
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.36
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.86
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.77
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.37
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.94
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.36
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.28
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.63
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.74
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.32
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.11
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.98
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.47
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.02
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.34
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.78
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.73
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.60
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.20
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.17
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.87
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.34
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.91
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.30
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.27
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	89.20
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.96
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.05
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.41
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.93
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.26
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.88
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.77
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.80
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.64
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.17
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.66
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.43
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.03
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.82
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.50
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	109.44
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.81
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.30
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.86
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.93
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.27
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.45
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.75
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.13
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.84
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.68
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.41
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.96
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.90
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.65
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.47
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.81
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.82
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.15
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.07
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.41
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.17
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.08
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.60
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.30
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.41
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.49
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.40
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.37
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.60
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.24
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.46
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.35
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.80
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.01
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.91
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.05
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.39
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.97
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.45
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.64
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.46
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.96
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.96
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.69
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.06
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.11
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.29
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	40.10
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	23.58
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	20.35
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	19.57
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	16.22
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	15.43
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	15.10
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	13.10
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	9.02
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	7.51

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.