Gene detail

Detailed information of OS493_005525-T1 in Lophelia pertusa

Genomic Location: scaffold_11:2202624...2214276
NR annotation: KAJ7365418.1, Adenylosuccinate synthetase isozyme 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A4Z6H1	Adenylosuccinate synthetase isozyme 2 OS=Sus scrofa OX=9823 GN=ADSS2 PE=2 SV=1
Q5ZJL5	Adenylosuccinate synthetase isozyme 2 OS=Gallus gallus OX=9031 GN=ADSS2 PE=2 SV=1
A7MBG0	Adenylosuccinate synthetase isozyme 2 OS=Bos taurus OX=9913 GN=ADSS2 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003486 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00709 all species →	Adenylsucc_synt	Adenylosuccinate synthetase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001114 all species →	Family	Adenylosuccinate synthetase	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR042110 all species →	Homologous_superfamily	Adenylosuccinate synthetase, domain 2	Interproscan
IPR033128 all species →	Active_site	Adenylosuccinate synthase, active site	Interproscan
IPR042111 all species →	Homologous_superfamily	Adenylosuccinate synthetase, domain 3	Interproscan
IPR018220 all species →	Binding_site	Adenylosuccinate synthase, GTP-binding site	Interproscan
IPR042109 all species →	Homologous_superfamily	Adenylosuccinate synthetase, domain 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11846 all species →	ADENYLOSUCCINATE SYNTHETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0004019 all species →	Molecular Function	adenylosuccinate synthase activity	Interproscan
GO:0006164 all species →	Biological Process	purine nucleotide biosynthetic process	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0044208 all species →	Biological Process	'de novo' AMP biosynthetic process	Interproscan
GO:0046040 all species →	Biological Process	IMP metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01939	purA, ADSS; adenylosuccinate synthase	EC:6.3.4.4	Alanine, aspartate and glutamate metabolism	ko00250	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_005525-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

38.6Max TPM

15.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	11.37	18.08
polyp at pH7 6	18	18	15.39	23.71
coral polyp · control treatment	16	16	20.92	32.18
coral polyp · oil and dispersant treatment	16	16	20.28	36.89
coral polyp · oil treatment	16	16	16.98	28.68
coral polyp · dispersant treatment	16	16	15.88	38.62
Polyp	10	10	8.64	18.83

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.08
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.86
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.99
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.06
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.17
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.05
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.68
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.11
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.29
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.78
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.35
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.15
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.52
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.49
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.47
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.30
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.31
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.00
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.71
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.98
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.66
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.46
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.19
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.03
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.18
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.77
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.27
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.19
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.00
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.53
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.38
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.17
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.06
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.65
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.79
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.18
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.49
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.90
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.44
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.37
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.67
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.95
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.98
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.82
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.63
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.29
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.50
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.17
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.00
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.92
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.36
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.89
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.85
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.18
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.86
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.27
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.15
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.98
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.78
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.30
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.22
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.85
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.00
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.89
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.23
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.66
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.30
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.68
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.46
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.43
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.88
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.19
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.47
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.00
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.71
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.51
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.22
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.30
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.05
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.53
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.78
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.39
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.16
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.62
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.37
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.23
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.75
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.29
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.13
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.61
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.96
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.77
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.09
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.02
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.51
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.70
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.75
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.62
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.60
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	18.83
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	11.09
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	10.17
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	9.50
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	9.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	7.78
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.64
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.57
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.36
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.41

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.