Gene detail

Detailed information of OS493_005551-T1 in Lophelia pertusa

Genomic Location: scaffold_11:2467951...2469861
NR annotation: KAJ7365444.1, hypothetical protein OS493_005551 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3T906	N-acetylglucosamine-1-phosphotransferase subunits alpha/beta OS=Homo sapiens OX=9606 GN=GNPTAB PE=1 SV=1
Q5RGJ8	N-acetylglucosamine-1-phosphotransferase subunits alpha/beta OS=Danio rerio OX=7955 GN=gnptab PE=1 SV=1
Q69ZN6	N-acetylglucosamine-1-phosphotransferase subunits alpha/beta OS=Mus musculus OX=10090 GN=Gnptab PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007720 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00066 all species →	Notch	LNR domain	Domain	Interproscan
PF17101 all species →	Stealth_CR1	Stealth protein CR1, conserved region 1	Family	Interproscan
PF11380 all species →	Stealth_CR2	Stealth protein CR2, conserved region 2	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000800 all species →	Domain	Notch domain	Interproscan
IPR047141 all species →	Family	Stealth family	Interproscan
IPR035993 all species →	Homologous_superfamily	Notch-like domain superfamily	Interproscan
IPR031358 all species →	Domain	Stealth protein CR1, conserved region 1	Interproscan
IPR021520 all species →	Domain	Stealth protein CR2, conserved region 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24045 all species →	-	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003976 all species →	Molecular Function	UDP-N-acetylglucosamine-lysosomal-enzyme N-acetylglucosaminephosphotransferase activity	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0016256 all species →	Biological Process	N-glycan processing to lysosome	Interproscan
GO:0046835 all species →	Biological Process	carbohydrate phosphorylation	Interproscan
GO:0016772 all species →	Molecular Function	transferase activity, transferring phosphorus-containing groups	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_005551-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_005551-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

16.1Max TPM

4.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	3.00	5.45
polyp at pH7 6	18	18	3.24	5.34
coral polyp · control treatment	16	16	7.53	16.14
coral polyp · oil and dispersant treatment	16	16	5.90	10.38
coral polyp · oil treatment	16	16	5.02	9.70
coral polyp · dispersant treatment	16	16	3.19	8.18
Polyp	10	10	1.37	2.75

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.45
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.54
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.53
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.35
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.04
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.94
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.06
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.91
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.83
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.56
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.52
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.35
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.28
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.11
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.03
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.96
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.43
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.19
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.34
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.11
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.90
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.87
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.56
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.02
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.88
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.37
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.16
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.12
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.83
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.36
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.28
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.08
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.01
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.50
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.46
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.44
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.14
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.46
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.32
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.95
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.90
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.59
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.89
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.15
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.38
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.81
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.16
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.70
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.52
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.57
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.07
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.78
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.38
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.85
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.78
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.47
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.35
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.75
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.53
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.31
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.60
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.71
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.70
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.41
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.60
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.59
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.22
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.18
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.70
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.41
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.40
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.59
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.71
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.60
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.29
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.25
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.87
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.60
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.24
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.78
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.11
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.08
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.51
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.23
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.18
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.90
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.31
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.04
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.78
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.42
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.39
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.17
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.15
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.87
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.09
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.93
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.91
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.49
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.27
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.11
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.75
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.74
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.76
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.52
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.10
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.04
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.84
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.80
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.60
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.53

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.