Gene detail

Detailed information of OS493_005570-T1 in Lophelia pertusa

Genomic Location: scaffold_11:2590206...2592829
NR annotation: KAJ7365462.1, UTP--glucose-1-phosphate uridylyltransferase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q07130	UTP--glucose-1-phosphate uridylyltransferase OS=Bos taurus OX=9913 GN=UGP2 PE=1 SV=2
O35156	UTP--glucose-1-phosphate uridylyltransferase OS=Cricetulus griseus OX=10029 GN=UGP2 PE=2 SV=3
Q16851	UTP--glucose-1-phosphate uridylyltransferase OS=Homo sapiens OX=9606 GN=UGP2 PE=1 SV=5

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003143 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01704 all species →	UDPGP	UTP--glucose-1-phosphate uridylyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029044 all species →	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan
IPR011004 all species →	Homologous_superfamily	Trimeric LpxA-like superfamily	Interproscan
IPR016267 all species →	Family	UTP--glucose-1-phosphate uridylyltransferase	Interproscan
IPR002618 all species →	Family	UDPGP family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43511 all species →	-	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003983 all species →	Molecular Function	UTP:glucose-1-phosphate uridylyltransferase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005977 all species →	Biological Process	glycogen metabolic process	Interproscan
GO:0006011 all species →	Biological Process	UDP-alpha-D-glucose metabolic process	Interproscan
GO:0070569 all species →	Molecular Function	uridylyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_005570-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_005570-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

104TPM > 0

7Conditions

32.2Max TPM

14.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	15.26	24.09
polyp at pH7 6	18	16	16.96	32.19
coral polyp · control treatment	16	16	17.58	31.56
coral polyp · oil and dispersant treatment	16	15	10.80	25.18
coral polyp · oil treatment	16	16	17.82	27.99
coral polyp · dispersant treatment	16	16	12.84	23.75
Polyp	10	8	7.60	13.75

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.09
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.04
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.23
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.92
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.93
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.57
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.09
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.74
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.10
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.43
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.93
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.13
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.13
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.10
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.71
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.65
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.81
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.19
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.57
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.15
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.98
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.87
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.09
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.92
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.92
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.50
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.30
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.68
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.91
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.02
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.49
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.46
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.25
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.56
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.66
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.15
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.16
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.06
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.89
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.85
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.43
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.94
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.56
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.44
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.81
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.22
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.86
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.72
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.93
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.18
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.27
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.58
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.36
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.24
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.49
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.36
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.03
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.72
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.71
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.69
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.74
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.35
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.26
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.77
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.99
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.19
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.68
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.51
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.78
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.16
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.45
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.97
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.60
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.19
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.97
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.40
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.02
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.89
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.20
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.04
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.75
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.07
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.38
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.20
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.71
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.69
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.04
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.03
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.74
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.33
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.22
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.76
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.31
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.29
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.82
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.04
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	13.75
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	12.29
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	11.34
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	11.21
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	9.24
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	7.57
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	7.43
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.20
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.