Gene detail

Detailed information of OS493_005571-T1 in Lophelia pertusa

Genomic Location: scaffold_11:2598341...2602883
NR annotation: KAJ7365463.1, UTP--glucose-1-phosphate uridylyltransferase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q07130	UTP--glucose-1-phosphate uridylyltransferase OS=Bos taurus OX=9913 GN=UGP2 PE=1 SV=2
P79303	UTP--glucose-1-phosphate uridylyltransferase OS=Sus scrofa OX=9823 GN=UGP2 PE=2 SV=3
Q54YZ0	UTP--glucose-1-phosphate uridylyltransferase 2 OS=Dictyostelium discoideum OX=44689 GN=ugpB PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003143 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01704 all species →	UDPGP	UTP--glucose-1-phosphate uridylyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029044 all species →	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan
IPR016267 all species →	Family	UTP--glucose-1-phosphate uridylyltransferase	Interproscan
IPR002618 all species →	Family	UDPGP family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43511 all species →	-	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003983 all species →	Molecular Function	UTP:glucose-1-phosphate uridylyltransferase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005977 all species →	Biological Process	glycogen metabolic process	Interproscan
GO:0006011 all species →	Biological Process	UDP-alpha-D-glucose metabolic process	Interproscan
GO:0070569 all species →	Molecular Function	uridylyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_005571-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_005571-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

105TPM > 0

7Conditions

20.4Max TPM

8.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	7.27	12.63
polyp at pH7 6	18	17	9.61	18.14
coral polyp · control treatment	16	16	9.55	17.39
coral polyp · oil and dispersant treatment	16	16	7.65	17.66
coral polyp · oil treatment	16	16	9.42	19.20
coral polyp · dispersant treatment	16	16	9.13	20.38
Polyp	10	8	2.21	4.54

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.63
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.34
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.67
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.84
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.75
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.69
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.93
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.10
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.67
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.28
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.14
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.76
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.12
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.36
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.34
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.29
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.14
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.13
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.41
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.38
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.18
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.76
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.56
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.55
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.40
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.40
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.40
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.18
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.15
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.41
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.33
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.90
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.67
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.39
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.92
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.21
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.60
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.21
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.06
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.46
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.07
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.87
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.03
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.45
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.88
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.16
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.00
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.36
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.14
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.66
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.06
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.06
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.55
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.97
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.67
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.70
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.49
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.66
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.62
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.54
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.89
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.71
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.17
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.98
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.63
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.20
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.85
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.18
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.39
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.14
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.22
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.12
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.07
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.43
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.63
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.45
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.50
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.26
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.80
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.10
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.40
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.38
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.52
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.12
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.50
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.40
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.38
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.28
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.76
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.43
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.92
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.43
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.35
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.31
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.13
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.79
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.37
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.54
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.95
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.87
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.84
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.45
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.67
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.57
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.17
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.