Gene detail

Detailed information of OS493_005609-T1 in Lophelia pertusa

Genomic Location: scaffold_11:3123823...3131521
NR annotation: KAJ7365500.1, hypothetical protein OS493_005609 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q29471	Annexin A13 OS=Canis lupus familiaris OX=9615 GN=ANXA13 PE=1 SV=2
P27216	Annexin A13 OS=Homo sapiens OX=9606 GN=ANXA13 PE=1 SV=3
Q99JG3	Annexin A13 OS=Mus musculus OX=10090 GN=Anxa13 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000486 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00191 all species →	Annexin	Annexin	Domain	Interproscan
PF13879 all species →	Hmw_CFAP97	Hemingway/CFA97	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037104 all species →	Homologous_superfamily	Annexin superfamily	Interproscan
IPR018252 all species →	Conserved_site	Annexin repeat, conserved site	Interproscan
IPR018502 all species →	Repeat	Annexin repeat	Interproscan
IPR001464 all species →	Family	Annexin	Interproscan
IPR029488 all species →	Family	Hemingway/CFA97	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10502 all species →	ANNEXIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005544 all species →	Molecular Function	calcium-dependent phospholipid binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_005609-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_005609-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

52.1Max TPM

14.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	11.22	27.33
polyp at pH7 6	18	18	10.84	26.54
coral polyp · control treatment	16	16	15.42	52.06
coral polyp · oil and dispersant treatment	16	16	20.72	31.51
coral polyp · oil treatment	16	16	14.77	34.28
coral polyp · dispersant treatment	16	16	18.34	42.16
Polyp	10	10	5.87	19.67

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.33
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.53
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.11
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.89
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.18
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.50
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.04
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.57
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.26
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.78
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.43
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.27
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.21
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.58
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.95
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.62
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.94
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.83
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.54
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.27
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.29
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.58
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.22
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.20
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.56
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.05
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.33
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.56
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.41
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.44
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.55
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.74
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.46
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.17
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.13
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.67
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.06
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.49
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.73
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.86
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.14
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.56
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.27
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.32
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.11
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.55
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.55
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.75
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.57
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.57
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.77
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.38
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.51
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.66
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.50
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.82
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.72
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.59
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.27
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.48
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.10
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.94
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.40
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.75
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.95
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.31
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.45
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.06
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.28
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.47
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.41
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.34
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.94
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.23
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.84
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.40
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.82
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.23
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.15
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.62
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.86
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.32
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.23
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.18
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.16
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.40
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.19
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.41
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.38
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.68
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.77
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.60
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.69
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.38
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.52
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.99
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.08
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.75
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.35
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.15
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	19.67
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.10
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.63
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	5.10
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.94
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	4.05
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.74
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.42
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.73
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.31

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.