Gene detail

Detailed information of OS493_005610-T1 in Lophelia pertusa

Genomic Location: scaffold_11:3140142...3142396
NR annotation: KAJ7365501.1, hypothetical protein OS493_005610 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010063 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13879 all species →	Hmw_CFAP97	Hemingway/CFA97	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029488 all species →	Family	Hemingway/CFA97	Interproscan

PANTHER

No PANTHER signature was detected for OS493_005610-T1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

No Gene Ontology signature was detected for OS493_005610-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_005610-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_005610-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

205.0Max TPM

26.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	44.17	94.46
polyp at pH7 6	18	18	40.11	122.77
coral polyp · control treatment	16	16	14.75	31.57
coral polyp · oil and dispersant treatment	16	16	8.91	16.70
coral polyp · oil treatment	16	16	23.13	43.08
coral polyp · dispersant treatment	16	14	7.98	35.58
Polyp	10	9	47.92	205.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	94.46
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	87.38
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	69.86
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	67.11
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.93
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.65
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.59
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.08
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.37
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.33
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.02
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.07
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.64
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.00
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.70
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.07
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.14
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.57
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	122.77
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	75.64
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	69.32
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	66.43
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.76
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.87
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.85
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.99
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.26
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.08
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.05
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.97
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.94
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.79
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.48
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.58
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.83
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.44
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.57
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.94
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.81
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.30
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.17
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.66
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.82
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.58
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.92
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.83
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.79
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.89
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.04
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.80
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.69
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.25
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.70
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.44
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.30
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.20
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.12
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.68
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.39
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.13
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.54
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.22
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.03
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.79
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.29
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.69
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.27
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.73
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.08
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.45
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.42
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.39
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.93
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.42
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.19
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.75
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.65
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.61
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.95
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.49
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.80
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.18
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.05
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.68
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.58
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.24
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.29
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.26
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.29
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.11
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.01
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.95
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.58
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.92
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.06
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.54
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.68
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.17
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	205.00
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	74.33
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	55.91
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	54.47
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	44.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	13.59
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	12.66
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	10.47
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.78
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.